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A roadmap for multi-omics data integration using deep learning
DOI:10.1093/bib/bbab454.png)
摘要
En 中文
High-throughput next-generation sequencing now makes it possible to generate a vast amount of multi-omics data for various applications. These data have revolutionized biomedical research by providing a more comprehensive understanding of the biological systems and molecular mechanisms of disease development. Recently, deep learning (DL) algorithms have become one of the most promising methods in multi-omics data analysis, due to their predictive performance and capability of capturing nonlinear and hierarchical features. While integrating and translating multi-omics data into useful functional insights remain the biggest bottleneck, there is a clear trend towards incorporating multi-omics analysis in biomedical research to help explain the complex relationships between molecular layers. Multi-omics data have a role to improve prevention, early detection and prediction; monitor progression; interpret patterns and endotyping; and design personalized treatments. In this review, we outline a roadmap of multi-omics integration using DL and offer a practical perspective into the advantages, challenges and barriers to the implementation of DL in multi-omics data.
Keyword:
deep learning
multi-omics
data integration
imputation
missing value
harmonization
risk prediction
precision medicine
期刊
IF:
7.7
论文数:
5.8K
被引数:
2.7W
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引用论文
Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models
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IF3.9

