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A single-step regression method based on transformer for retinal layer segmentation

delete2022-07-08
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AI
曹国刚 封面图
曹国刚 (Guogang Cao) *
S
Shu Zhang
H
Hongdong Mao
Y
Yan Wu
王栋 封面图
王栋 (Dong Wang)
戴翠霞 封面图
戴翠霞 (Cuixia Dai)
DOI:10.1088/1361-6560/ac799adelete
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摘要

摘要

En 中文
The shape and structure of retinal layers are basic characteristics for the diagnosis of many ophthalmological diseases. Based on B-Scans of optical coherence tomography, most of retinal layer segmentation methods are composed of two-steps: classifying pixels and extracting retinal layers, in which the optimization of two independent steps decreases the accuracy. Although the methods based on deep learning are highly accurate, they require a large amount of labeled data. This paper proposes a single-step method based on transformer for retinal layer segmentation, which is trained by axial data (A-Scans), to obtain the boundary of each layer. The proposed method was evaluated on two public data sets. The first one contains eight retinal layer boundaries for diabetic macular edema, and the second one contains nine retinal layer boundaries for healthy controls and subjects with multiple sclerosis. Its absolute average distance errors are 0.99 pixels and 3.67 pixels, respectively, for the two sets, and its root mean square error is 1.29 pixels for the latter set. In addition, its accuracy is acceptable even if the training data is reduced to 0.3. The proposed method achieves state-of-the-art performance while maintaining the correct topology and requires less labeled data.
Keyword:
OCT
retinal layer segmentation
transformer

期刊

Physics in Medicine and Biology 封面图
Physics in Medicine and Biology
IF:
3.4
论文数:
1.4W
被引数:
3.1W

机构

S
shanghai institute of technology
学者数:
5.8K
论文数: 3.7K
被引数: 1
引用论文

引用论文

Structured layer surface segmentation for retina OCT using fully convolutional regression networks
err2021-02-01
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errHe, Yufan; Carass, Aaron; Liu, Yihao; Jedynak, Bruno M.; Solomon, Sharon D.; Saidha, Shiv; Calabresi, Peter A.; Prince, Jerry L.
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