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Configurable web-services for biomedical document annotation

delete2018-12-21
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Sérgio Matos *
DOI:10.1186/s13321-018-0317-4delete
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摘要

摘要

En 中文
The need to efficiently find and extract information from the continuously growing biomedical literature has led to the development of various annotation tools aimed at identifying mentions of entities and relations. Many of these tools have been integrated in user-friendly applications facilitating their use by non-expert text miners and database curators. In this paper we describe the latest version of Neji, a web-services ready text processing and annotation framework. The modular and flexible architecture facilitates adaptation to different annotation requirements, while the built-in web services allow its integration in external tools and text mining pipelines. The evaluation of the web annotation server on the technical interoperability and performance of annotation servers track of BioCreative V.5 further illustrates the flexibility and applicability of this framework.
Keyword:
Named entity recognition
Biomedical text mining
Web-services
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期刊

Journal of Cheminformatics 封面图
Journal of Cheminformatics
IF:
5.7
论文数:
1.5K
被引数:
1.1W

机构

U
universidade de aveiro
学者数:
1.3W
论文数: 1.4W
被引数: 24
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