arrow
返回

Data-centric feedback loops for next-generation immunotherapy development

delete2026-08-28
delete0
PRE
AI
R
Rotem Shalita
I
Ido Amit *
DOI:10.1038/s41551-026-01785-6delete
delete原文链接
delete原文求助
delete分享
delete收藏
摘要

摘要

En 中文
尽管受基因组学驱动的生物医学数据生成和计算能力呈爆炸式增长,但过去几十年中,进入I期临床试验的候选药物最终获得批准的概率却始终顽固地低。这一悖论表明瓶颈并非在于数据生成,而在于将生物和临床数据转化为指导进展、重新设计或终止的决策。本文认为,药物开发应从线性管道转变为由持续数据反馈驱动的迭代学习系统。我们概述了一个以数据为中心的框架,其中高维、多模态的分子和扰动数据,特别是单细胞和空间读出数据,被用于在发现和临床阶段迭代优化疾病模型、治疗假设、分子设计和患者分层策略。以免疫疗法作为概念验证领域,我们提出来自治疗性扰动的单细胞分子读出既能降低开发风险,又能深化对人类免疫反应的机制理解。最后,我们将此与强化学习进行类比,其中人类的分子和临床数据提供反馈信号,用于更新机制模型并指导后续干预措施的设计。采纳这一范式为更具机制基础、情境感知且转化成功率更高的疗法开辟了道路。本文认为,生物发现和药物开发应通过持续的数据反馈循环联系起来,以迭代优化治疗假设、药物设计和患者分层策略。

期刊

Nature Biomedical Engineering 封面图
Nature Biomedical Engineering
IF:
26.6
论文数:
1.7K
被引数:
2.0W

机构

W
Weizmann Institute of Science
学者数:
1.3W
论文数: 1.1W
被引数: 2.3W
引用论文

引用论文

How to build the virtual cell with artificial intelligence: Priorities and opportunities如何使用人工智能构建虚拟细胞:优先事项和机遇
errCELL
IF42.5
err2024-12-01
err15
errOAAI
errRosen, Yanay; Roed, Marcel; Alexandrov, Theo; Alquraishi, Mohammed; Brennan, Patricia; Burkhardt, Daniel B.; Califano, Andrea; Cool, Jonah; Dernburg, Abby F.; Ewing, Kirsty; Fox, Emily B.; Herr, Amy E.; Horvitz, Eric; Hsu, Patrick D.; Jain, Viren; Johnson, Gregory R.; Kalil, Thomas; Kelley, David R.; Kelley, Shana O.; Kreshuk, Anna; Mitchison, Tim; Otte, Stephani; Shendure, Jay; Sofroniew, Nicholas J.; Theis, Fabian; Theodoris, Christina, V; Upadhyayula, Srigokul; Valer, Marc; Wang, Bo; Xing, Eric; Yeung-Levy, Serena; Zitnik, Marinka; Karaletsos, Theofanis; Regev, Aviv; Lundberg, Emma; Leskovec, Jure; Quake, Stephen R.
err分享
err收藏
Single-cell immunology: Past, present, and future
errIMMUNITY
IF26.3
err2022-03-01
err61
errOAAI
errGinhoux, Florent; Yalin, Adam; Dutertre, Charles Antoine; Amit, Ido
err分享
err收藏
Impact of a five-dimensional framework on R&D productivity at AstraZeneca五维框架对阿斯利康研发生产率的影响
err2018-01-19
err269
PREAI
errMorgan, Paul; Brown, Dean G.; Lennard, Simon; Anderton, Mark J.; Barrett, J. Carl; Eriksson, Ulf; Fidock, Mark; Hamren, Bengt; Johnson, Anthony; March, Ruth E.; Matcham, James; Mettetal, Jerome; Nicholls, David J.; Platz, Stefan; Rees, Steve; Snowden, Michael A.; Pangalos, Menelas N.
err分享
err收藏
Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry
err2019-05-06
err692
errOAAI
errZhang, Fan; Wei, Kevin; Slowikowski, Kamil; Fonseka, Chamith Y.; Rao, Deepak A.; Kelly, Stephen; Goodman, Susan M.; Tabechian, Darren; Hughes, Laura B.; Salomon-Escoto, Karen; Watts, Gerald F. M.; Jonsson, A. Helena; Rangel-Moreno, Javier; Meednu, Nida; Rozo, Cristina; Apruzzese, William; Eisenhaure, Thomas M.; Lieb, David J.; Boyle, David L.; Mandelin, Arthur M., II; Boyce, Brendan F.; DiCarlo, Edward; Gravallese, Ellen M.; Gregersen, Peter K.; Moreland, Larry; Firestein, Gary S.; Hacohen, Nir; Nusbaum, Chad; Lederer, James A.; Perlman, Harris; Pitzalis, Costantino; Filer, Andrew; Holers, V. Michael; Bykerk, Vivian P.; Donlin, Laura T.; Anolik, Jennifer H.; Brenner, Michael B.; Raychaudhuri, Soumya; Albrecht, Jennifer; Bridges, S. Louis, Jr.; Buckley, Christopher D.; Buckner, Jane H.; Dolan, James; Guthridge, Joel M.; Gutierrez-Arcelus, Maria; Ivashkiv, Lionel B.; James, Eddie A.; James, Judith A.; Keegan, Josh; Lee, Yvonne C.; McGeachy, Mandy J.; McNamara, Michael A.; Mears, Joseph R.; Mizoguchi, Fumitaka; Nguyen, Jennifer P.; Noma, Akiko; Orange, Dana E.; Rohani-Pichavant, Mina; Ritchlin, Christopher; Robinson, William H.; Seshadri, Anupamaa; Sutherby, Danielle; Seifert, Jennifer; Turner, Jason D.; Utz, Paul J.
err分享
err收藏
A single-cell and spatially resolved atlas of human breast cancers人类乳腺癌的单细胞和空间分辨图谱
err2021-09-06
err628
errOAAI
errWu, Sunny Z.; Al-Eryani, Ghamdan; Roden, Daniel Lee; Junankar, Simon; Harvey, Kate; Andersson, Alma; Thennavan, Aatish; Wang, Chenfei; Torpy, James R.; Bartonicek, Nenad; Wang, Taopeng; Larsson, Ludvig; Kaczorowski, Dominik; Weisenfeld, Neil, I; Uytingco, Cedric R.; Chew, Jennifer G.; Bent, Zachary W.; Chan, Chia-Ling; Gnanasambandapillai, Vikkitharan; Dutertre, Charles-Antoine; Gluch, Laurence; Hui, Mun N.; Beith, Jane; Parker, Andrew; Robbins, Elizabeth; Segara, Davendra; Cooper, Caroline; Mak, Cindy; Chan, Belinda; Warrier, Sanjay; Ginhoux, Florent; Millar, Ewan; Powell, Joseph E.; Williams, Stephen R.; Liu, X. Shirley; O'Toole, Sandra; Lim, Elgene; Lundeberg, Joakim; Perou, Charles M.; Swarbrick, Alexander
err分享
err收藏
Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia急性髓系白血病中先天性和获得性药物耐药性的单细胞景观
err2024-10-30
err0
errOAAI
errRebekka Wegmann; Ximena Bonilla; Ruben Casanova; Stéphane Chevrier; Ricardo Coelho; Cinzia Esposito; Joanna Ficek-Pascual; Sandra Goetze; Gabriele Gut; Francis Jacob; Andrea Jacobs; Jack Kuipers; Ulrike Lischetti; Julien Mena; Emanuela S. Milani; Michael Prummer; Jacobo Sarabia Del Castillo; Franziska Singer; Sujana Sivapatham; Nora C. Toussaint; Oliver Vilinovszki; Mattheus H. E. Wildschut; Tharshika Thavayogarajah; Disha Malani; Rudolf Aebersold; Melike Ak; Faisal S. Al-Quaddoomi; Silvana I. Albert; Jonas Albinus; Ilaria Alborelli; Sonali Andani; Per-Olof Attinger; Marina Bacac; Daniel Baumhoer; Beatrice Beck-Schimmer; Niko Beerenwinkel; Christian Beisel; Lara Bernasconi; Anne Bertolini; Bernd Bodenmiller; Ximena Bonilla; Lars Bosshard; Byron Calgua; Natalia Chicherova; Maya D’Costa; Esther Danenberg; Natalie R. Davidson; Monica-Andreea Drăgan; Reinhard Dummer; Stefanie Engler; Martin Erkens; Katja Eschbach; Cinzia Esposito; André Fedier; Pedro F. Ferreira; Joanna Ficek-Pascual; Anja L. Frei; Bruno Frey; Sandra Goetze; Linda Grob; Gabriele Gut; Detlef Günther; Pirmin Haeuptle; Viola Heinzelmann-Schwarz; Sylvia Herter; Rene Holtackers; Tamara Huesser; Alexander Immer; Anja Irmisch; Tim M. Jaeger; Katharina Jahn; Alva R. James; Philip M. Jermann; André Kahles; Abdullah Kahraman; Viktor H. Koelzer; Werner Kuebler; Jack Kuipers; Christian P. Kunze; Christian Kurzeder; Kjong-Van Lehmann; Mitchell Levesque; Flavio C. Lombardo; Sebastian Lugert; Gerd Maass; Philipp Markolin; Martin Mehnert; Julien Mena; Julian M. Metzler; Nicola Miglino; Holger Moch; Simone Muenst; Riccardo Murri; Charlotte K. Y. Ng; Stefan Nicolet; Marta Nowak; Monica Nunez Lopez; Patrick G. A. Pedrioli; Lucas Pelkmans; Salvatore Piscuoglio; Michael Prummer; Laurie Prélot; Natalie Rimmer; Mathilde Ritter; Christian Rommel; María L. Rosano-González; Gunnar Rätsch; Natascha Santacroce; Jacobo Sarabia del Castillo; Ramona Schlenker; Petra C. Schwalie; Severin Schwan; Tobias Schär; Gabriela Senti; Wenguang Shao; Franziska Singer; Berend Snijder; Bettina Sobottka; Vipin T. Sreedharan; Stefan Stark; Daniel J. Stekhoven; Tanmay Tanna; Tinu M. Thomas; Markus Tolnay; Vinko Tosevski; Nora C. Toussaint; Mustafa A. Tuncel; Marina Tusup; Audrey Van Drogen; Marcus Vetter; Tatjana Vlajnic; Sandra Weber; Walter P. Weber; Rebekka Wegmann; Michael Weller; Fabian Wendt; Norbert Wey; Mattheus H. E. Wildschut; Shuqing Yu; Johanna Ziegler; Marc Zimmermann; Martin Zoche; Gregor Zuend; Rudolf Aebersold; Marina Bacac; Niko Beerenwinkel; Christian Beisel; Bernd Bodenmiller; Viola Heinzelmann-Schwarz; Viktor H. Koelzer; Mitchell P. Levesque; Holger Moch; Lucas Pelkmans; Gunnar Rätsch; Markus Tolnay; Andreas Wicki; Bernd Wollscheid; Markus G. Manz; Berend Snijder; Alexandre P. A. Theocharides
err分享
err收藏
Artificial intelligence in drug development药物开发中的人工智能
err2025-01-20
err18
PREAI
errYang, Xin; Yu, Yunfang; Li, Gen; Li, Xiaokun; Wu, Joseph C.
err分享
err收藏
Methods and applications of in vivo CRISPR screening体内CRISPR筛选方法及应用
err2025-07-29
err0
PREAI
errAntonio J. Santinha; Alessio Strano; Randall J. Platt
err分享
err收藏
学者 查看更多内容