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Deep learning for single-shot autofocus microscopy

delete2019-06-05
delete122
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OA
AI
H
Henry Pinkard *
Z
Zachary F. Phillips
A
Arman Babakhani
D
Daniel A. Fletcher
L
Laura Waller
DOI:10.1364/OPTICA.6.000794delete
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摘要

摘要

En 中文
Maintaining an in-focus image over long time scales is an essential and nontrivial task for a variety of microscopy applications. Here, we describe a fast, robust autofocusing method compatible with a wide range of existing microscopes. It requires only the addition of one or a few off-axis illumination sources (e.g., LEDs), and can predict the focus correction from a single image with this illumination. We designed a neural network architecture, the fully connected Fourier neural network (FCFNN), that exploits an understanding of the physics of the illumination to make accurate predictions with 2-3 orders of magnitude fewer learned parameters and less memory usage than existing state-of-the-art architectures, allowing it to be trained without any specialized hardware. We provide an open-source implementation of our method, to enable fast, inexpensive autofocus compatible with a variety of microscopes. (C) 2019 Optical Society of America under the terms of the OSA Open Access Publishing Agreement
Keyword:
HIGH-RESOLUTION
FIELD

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Optica
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8.5
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2.4K
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university of california san francisco
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U
University of California Berkeley
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被引数: 11.3W
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University of California System
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被引数: 6.6K
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引用论文

引用论文

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Simple and robust image-based autofocusing for digital microscopy
err2008-05-28
err159
errOAAI
errYazdanfar, Siavash; Kenny, Kevin B.; Tasimi, Krenar; Corwin, Alex D.; Dixon, Elizabeth L.; Filkins, Robert J.
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