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Determining crystal structures through crowdsourcing and coursework

delete2016-09-16
delete28
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OA
AI
S
Scott Horowitz
B
Brian Koepnick
R
Raoul Martin
A
Agnes Tymieniecki
A
Amanda A. Winburn
S
Seth Cooper
J
Jeff Flatten
D
David Rogawski
N
Nicole M. Koropatkin
T
Tsinatkeab T. Hailu
N
Neha Jain
P
Philipp Koldewey
L
Logan S. Ahlstrom
M
Matthew R. Chapman
A
Andrew P. Sikkema
M
Meredith A. Skiba
F
Finn P. Maloney
F
Felix R. M. Beinlich
P
Popovic, Zoran
D
David Baker
K
Khatib, Firas *
J
James C.A. Bardwell *
DOI:10.1038/ncomms12549delete
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Abstract

Abstract

En 中文
We show here that computer game players can build high-quality crystal structures. Introduction of a new feature into the computer game Foldit allows players to build and real-space refine structures into electron density maps. To assess the usefulness of this feature, we held a crystallographic model-building competition between trained crystallographers, undergraduate students, Foldit players and automatic model-building algorithms. After removal of disordered residues, a team of Foldit players achieved the most accurate structure. Analysing the target protein of the competition, YPL067C, uncovered a new family of histidine triad proteins apparently involved in the prevention of amyloid toxicity. From this study, we conclude that crystallographers can utilize crowdsourcing to interpret electron density information and to produce structure solutions of the highest quality.
Keywords:
STRUCTURE REFINEMENT
PROTEIN STRUCTURES
PHENIX
AGGREGATION
PREDICTION
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Nature Communications cover
Nature Communications
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15.7
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