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Enhanced Sampling with Machine Learning

delete2024-06-28
delete22
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OA
AI
M
Mehdi Shams
Z
Zachary A. Smith
L
Lukas Herron
Z
Ziyue Zou
P
Pratyush Tiwary *
DOI:10.1146/annurev-physchem-083122-125941delete
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摘要

摘要

En 中文
Molecular dynamics (MD) enables the study of physical systems with excellent spatiotemporal resolution but suffers from severe timescale limitations. To address this, enhanced sampling methods have been developed to improve the exploration of configurational space. However, implementing these methods is challenging and requires domain expertise. In recent years, integration of machine learning (ML) techniques into different domains has shown promise, prompting their adoption in enhanced sampling as well. Although ML is often employed in various fields primarily due to its data-driven nature, its integration with enhanced sampling is more natural with many common underlying synergies. This review explores the merging of ML and enhanced MD by presenting different shared viewpoints. It offers a comprehensive overview of this rapidly evolving field, which can be difficult to stay updated on.We highlight successful strategies such as dimensionality reduction, reinforcement learning, and flow-based methods. Finally, we discuss open problems at the exciting ML-enhanced MD interface.
Keyword:
molecular dynamics
enhanced sampling
machine learning
artificial neural networks

期刊

Annual Review of Physical Chemistry 封面图
Annual Review of Physical Chemistry
IF:
11.7
论文数:
1.5K
被引数:
8.9K

机构

University System of Maryland 封面图
University System of Maryland
学者数:
6.5W
论文数: 5.6W
被引数: 113
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