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Generative Models for Chemical Structures

delete2010-07-13
delete21
PRE
AI
D
David White
R
Richard C. Wilson *
DOI:10.1021/ci9004089delete
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Abstract

Abstract

En 中文
We apply recently developed techniques for pattern recognition to construct a generative model for chemical structure. This approach can be viewed as ligand-based de novo design. We construct a statistical model describing the structural variations present in a set of molecules which may be sampled to generate new structurally similar examples. We prevent the possibility of generating chemically invalid molecules, according to our implicit hydrogen model, by projecting samples onto the nearest chemically valid molecule. By populating the input set with molecules that are active against a target, we show how new molecules may be generated that will likely also be active against the target.
Keywords:
DE-NOVO DESIGN
MEDIAN GRAPHS
PROGRAM
DOCKING
VALIDATION
ALGORITHM
DATABASES
SPACE

Journal

Journal of Chemical Information and Modeling cover
Journal of Chemical Information and Modeling
IF:
5.3
Papers:
9.1K
Citations:
4.0W

Organization

O
otto friedrich university bamberg
Scholars:
919
Papers: 990
Citations: 2
U
university of york - uk
Scholars:
1.5W
Papers: 1.5W
Citations: 15