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MG-DIFF: A novel molecular graph diffusion model for molecular generation and optimization

delete2025-10-16
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PRE
AI
X
Xiao-Chen Zhang *
S
Shuangxi Wang
方英 封面图
方英 (Ying Fang)
Q
Qiankun Zhang
DOI:10.1371/journal.pone.0331450delete
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摘要

摘要

En 中文
近期去噪扩散模型在图像、文本和视频生成方面取得了突破性进展。受这些成就启发,研究人员将去噪扩散模型扩展到分子生成领域。然而,现有的分子生成扩散模型未完全根据分子的独特特征进行优化,导致性能不佳且在条件性分子优化方面存在挑战。本文介绍了MG-DIFF模型,这是一种专为分子生成与优化设计的新型方法。与以往方法相比,MG-DIFF引入了三项关键改进。首先,我们提出了一种掩码替换离散扩散策略,该策略专门设计用于适应分子结构的复杂模式,从而提升分子生成质量。其次,我们引入了一种具有随机节点初始化的图Transformer模型,能够克服由一阶Weisfeiler-Lehman测试定义的常规图神经网络的表示能力限制。最后,我们提出了一种图填充策略,使我们的方法不仅能进行条件生成,还能通过添加特定原子团来优化分子。在多个分子生成基准测试中,所提出的MG-DIFF模型实现了当前最佳性能,并展示了巨大的分子优化潜力。

期刊

PLoS One 封面图
PLoS One
IF:
2.6
论文数:
2.6W
被引数:
81.6W

机构

S
Shangqiu Normal University
学者数:
1.4K
论文数: 934
被引数: 1.0K
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