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PatchSorter: a high throughput deep learning digital pathology tool for object labeling

delete2024-06-20
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OA
AI
C
C.F. Walker
T
Tasneem Talawalla
R
Róbert Tóth
A
Akhil Ambekar
K
Kien Rea
O
Oswin Chamian
樊凡 cover
樊凡 (Fan Fan)
S
Sabina Berezowska
S
Sven Rottenberg
A
Anant Madabhushi
M
Marie Maillard
L
Laura Barisoni
H
Hugo M. Horlings
A
Andrew Janowczyk *
DOI:10.1038/s41746-024-01150-4delete
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Abstract

Abstract

En 中文
The discovery of patterns associated with diagnosis, prognosis, and therapy response in digital pathology images often requires intractable labeling of large quantities of histological objects. Here we release an open-source labeling tool, PatchSorter, which integrates deep learning with an intuitive web interface. Using >100,000 objects, we demonstrate a >7x improvement in labels per second over unaided labeling, with minimal impact on labeling accuracy, thus enabling high-throughput labeling of large datasets.
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npj Digital Medicine cover
npj Digital Medicine
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