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Performance Optimization for Relative-Error-Bounded Lossy Compression on Scientific Data

delete2020-07-01
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OA
AI
X
Xiangyu Zou *
T
Tao Lü
W
Wen Xia
王
王晅 (Xuan Wang)
张
张伟哲 (Weizhe Zhang)
H
Haijun Zhang
S
Sheng Di
D
Dingwen Tao
F
Franck Cappello
DOI:10.1109/TPDS.2020.2972548delete
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摘要

摘要

En 中文
Scientific simulations in high-performance computing (HPC) environments generate vast volume of data, which may cause a severe I/O bottleneck at runtime and a huge burden on storage space for postanalysis. Unlike traditional data reduction schemes such as deduplication or lossless compression, not only can error-controlled lossy compression significantly reduce the data size but it also holds the promise to satisfy user demand on error control. Pointwise relative error bounds (i.e., compression errors depends on the data values) are widely used by many scientific applications with lossy compression since error control can adapt to the error bound in the dataset automatically. Pointwise relative-error-bounded compression is complicated and time consuming. In this article, we develop efficient precomputation-based mechanisms based on the SZ lossy compression framework. Our mechanisms can avoid costly logarithmic transformation and identify quantization factor values via a fast table lookup, greatly accelerating the relative-error-bounded compression with excellent compression ratios. In addition, we reduce traversing operations for Huffman decoding, significantly accelerating the decompression process in SZ. Experiments with eight well-known real-world scientific simulation datasets show that our solution can improve the compression and decompression rates (i.e., the speed) by about 40 and 80 p, respectively, in most of cases, making our designed lossy compression strategy the best-in-class solution in most cases.
Keyword:
Lossy compression
high-performance computing
scientific data
compression rate
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期刊

IEEE Transactions on Parallel and Distributed Systems 封面图
IEEE Transactions on Parallel and Distributed Systems
IF:
6
论文数:
5.2K
被引数:
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H
harbin institute of technology
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8.0W
论文数: 6.6W
被引数: 66
M
marvell technology group
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89
论文数: 85
被引数: 0
A
Argonne National Laboratory
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1.1W
论文数: 9.2K
被引数: 3.8W
U
united states department of energy (doe)
学者数:
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论文数: 9.6W
被引数: 246
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