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Prion protein β2-α2 loop conformational landscape

delete2017-08-21
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OA
AI
E
Enrico Caldarulo
A
Alessandro Barducci
K
Kurt Wüthrich
M
Michele Parrinello *
DOI:10.1073/pnas.1712155114delete
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摘要

摘要

En 中文
In transmissible spongiform encephalopathies (TSEs), which are lethal neurodegenerative diseases that affect humans and a wide range of other mammalian species, the normal cellular prion protein (PrPc) is transformed into amyloid aggregates representing the scrapie form of the protein (PrPsc). Continued research on this system is of keen interest, since new information on the physiological function of PrPc in healthy organisms is emerging, as well as new data on the mechanism of the transformation of PrPc to PrPsc. In this paper we used two different approaches: a combination of the well-tempered ensemble (WTE) and parallel tempering (PT) schemes and metadynamics (MetaD) to characterize the conformational free-energy surface of PrPc. The focus of the data analysis was on an 11-residue polypeptide segment in mouse PrPc(121-231) that includes the beta 2-alpha 2 loop of residues 167-170, for which a correlation between structure and susceptibility to prion disease has previously been described. This study includes wild-type mouse PrPc and a variant with the single residue replacement Y169A. The resulting detailed conformational landscapes complement in an integrative manner the available experimental data on PrPc, providing quantitative insights into the nature of the structural transition-related function of the beta 2-alpha 2 loop.
Keyword:
prion
beta 2-alpha 2 loop
metadynamics
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期刊

P
Proceedings of the National Academy of Sciences of the United States of America
IF:
9.1
论文数:
10.8W
被引数:
73.5W

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Universita della Svizzera Italiana
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institut national de la sante et de la recherche medicale (inserm)
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S
swiss federal institutes of technology domain
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