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Sequence assembly with CAFTOOLS
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DOI：10.1101/gr.8.3.260.png)
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摘要
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Large-scale genomic sequencing requires a software infrastructure to support and integrate applications that are not directly compatible. We describe a suite of software tools built around the Common Assembly Format (CAF), a comprehensive representation of a sequence assembly as a text file. These tools Form the backbone of sequencing informatics at the Sanger Centre and the Genome Sequencing Center. The CAF format is intentionally flexible, and our Perl and C libraries, which parse and manipulate it, provide powerful tools for creating new applications as well as wrappers to incorporate other software. The tools are available fl ee by anonymous FTP from ftp://ftp.sanger.ac.uk/pub/badger/.
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5.5
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5.6K
被引数:
4.3W
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