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SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

delete2012-11-29
delete211
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OA
AI
S
Sameer Velankar *
J
Jose M Dana
J
Julius O.B. Jacobsen
G
Glen van Ginkel
P
Paul J. Gane
J
Jie Luo
T
Thomas J. Oldfield
C
Claire O’Donovan
M
María Martin
G
Gerard J. Kleywegt
DOI:10.1093/nar/gks1258delete
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摘要

摘要

En 中文
The Structure Integration with Function, Taxonomy and Sequences resource (SIFTS; http://pdbe.org/sifts) is a close collaboration between the Protein Data Bank in Europe (PDBe) and UniProt. The two teams have developed a semi-automated process for maintaining up-to-date cross-reference information to UniProt entries, for all protein chains in the PDB entries present in the UniProt database. This process is carried out for every weekly PDB release and the information is stored in the SIFTS database. The SIFTS process includes cross-references to other biological resources such as Pfam, SCOP, CATH, GO, InterPro and the NCBI taxonomy database. The information is exported in XML format, one file for each PDB entry, and is made available by FTP. Many bioinformatics resources use SIFTS data to obtain cross-references between the PDB and other biological databases so as to provide their users with up-to-date information.
Keyword:
PROTEIN DATA-BANK
DATABASE
DOMAIN
FAMILY
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期刊

Nucleic Acids Research 封面图
Nucleic Acids Research
IF:
13.1
论文数:
3.6W
被引数:
29.0W

机构

E
european molecular biology laboratory (embl)
学者数:
8.3K
论文数: 5.1K
被引数: 31
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