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The antiSMASH database version 5

delete2025-11-01
delete0
PRE
AI
K
Kai Blin
S
Simon J. Shaw
M
Marnix H. Medema
T
Tilmann Weber *
DOI:10.1093/nar/gkaf1210delete
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摘要

摘要

En 中文
微生物产生的特化代谢物常用于药物和作物保护剂的开发。基因组挖掘是广泛用于发掘这一潜力的方法,而antiSMASH通常是执行此任务的优选工具。在此,我们介绍了antiSMASH数据库的第5版,其中由antiSMASH 8.1提供的生物合成基因簇预测结果可通过易于使用的网页界面获取。该数据库的第5版包含833个古菌、54800个细菌和421个真菌基因组,并可从https://antismash-db.secondarymetabolites.org/获取。
Keyword:
TOOLS

期刊

Nucleic Acids Research 封面图
Nucleic Acids Research
IF:
13.1
论文数:
3.6W
被引数:
29.0W

机构

T
Technical University of Denmark
学者数:
2.8K
论文数: 1.1K
被引数: 1
W
Wageningen University & Research
学者数:
2.9W
论文数: 2.8W
被引数: 55
引用论文

引用论文

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisationantiSMASH 7.0: 检测,调节,化学结构和可视化的新的和改进的预测
err2023-05-04
err674
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errBlin, Kai; Shaw, Simon; Augustijn, Hannah E.; Reitz, Zachary L.; Biermann, Friederike; Alanjary, Mohammad; Fetter, Artem; Terlouw, Barbara R.; Metcalf, William W.; Helfrich, Eric J. N.; van Wezel, Gilles P.; Medema, Marnix H.; Weber, Tilmann
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NCBI RefSeq: reference sequence standards through 25 years of curation and annotationNCBI RefSeq:25年curated和注释历程中的参考序列标准
err2024-11-11
err3
errOAAI
errGoldfarb, Tamara; Kodali, Vamsi K.; Pujar, Shashikant; Brover, Vyacheslav; Robbertse, Barbara; Farrell, Catherine M.; Oh, Dong-Ha; Astashyn, Alexander; Ermolaeva, Olga; Haddad, Diana; Hlavina, Wratko; Hoffman, Jinna; Jackson, John D.; Joardar, Vinita S.; Kristensen, David; Masterson, Patrick; Mcgarvey, Kelly M.; Mcveigh, Richard; Mozes, Eyal; Murphy, Michael R.; Schafer, Susan S.; Souvorov, Alexander; Spurrier, Brett; Strope, Pooja K.; Sun, Hanzhen; Vatsan, Anjana R.; Wallin, Craig; Webb, David; Brister, J. Rodney; Hatcher, Eneida; Kimchi, Avi; Klimke, William; Marchler-Bauer, Aron; Pruitt, Kim D.; Thibaud-Nissen, Francoise; Murphy, Terence D.
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antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producersantiSMASH 2.0-用于次级代谢物生产者基因组挖掘的多功能平台
err2013-05-21
err730
errOAAI
errBlin, Kai; Medema, Marnix H.; Kazempour, Daniyal; Fischbach, Michael A.; Breitling, Rainer; Takano, Eriko; Weber, Tilmann
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antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
err2019-04-29
err2.2K
errOAAI
errBlin, Kai; Shaw, Simon; Steinke, Katharina; Villebro, Rasmus; Ziemert, Nadine; Lee, Sang Yup; Medema, Marnix H.; Weber, Tilmann
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antiSMASH 6.0: improving cluster detection and comparison capabilitiesantiSMASH 6.0: 提高集群检测和比较能力
err2021-05-12
err1.7K
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errBlin, Kai; Shaw, Simon; Kloosterman, Alexander M.; Charlop-Powers, Zach; van Wezel, Gilles P.; Medema, Marnix H.; Weber, Tilmann
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The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters
err2018-11-05
err208
errOAAI
errBlin, Kai; Andreu, Victoria Pascal; de los Santos, Emmanuel L. C.; Del Carratore, Francesco; Lee, Sang Yup; Medema, Marnix H.; Weber, Tilmann
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