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WikiPathways: connecting communities

delete2020-11-19
delete509
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OA
AI
M
Marvin Martens
A
Ammar Ammar
A
Anders Riutta
A
Andra Waagmeester
D
Denise Slenter
K
Kristina Hanspers
R
Ryan A. Miller
D
Daniela Digles
É
Élisson Nogueira Lopes
F
Friederike Ehrhart
L
Lauren J. Dupuis
L
Laurent Winckers
S
Susan L. Coort
E
Egon Willighagen
C
Chris T. Evelo
A
Alexander R. Pico
M
Martina Kutmon *
DOI:10.1093/nar/gkaa1024delete
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摘要

摘要

En 中文
WikiPathways (https://www.wikipathways.org) is a biological pathway database known for its collaborative nature and open science approaches. With the core idea of the scientific community developing and curating biological knowledge in pathway models, WikiPathways lowers all barriers for accessing and using its content. Increasingly more content creators, initiatives, projects and tools have started using WikiPathways. Central in this growth and increased use of WikiPathways are the various communities that focus on particular subsets of molecular pathways such as for rare diseases and lipid metabolism. Knowledge from published pathway figures helps prioritize pathway development, using optical character and named entity recognition. We show the growth of WikiPathways over the last three years, highlight the new communities and collaborations of pathway authors and curators, and describe various technologies to connect to external resources and initiatives. The road toward a sustainable, community-driven pathway database goes through integration with other resources such as Wikidata and allowing more use, curation and redistribution of WikiPathways content.
Keyword:
SET ENRICHMENT ANALYSIS
FRAMEWORK
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期刊

Nucleic Acids Research 封面图
Nucleic Acids Research
IF:
13.1
论文数:
3.6W
被引数:
29.0W

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Maastricht University
学者数:
3.1W
论文数: 2.8W
被引数: 277
T
the j david gladstone institutes
学者数:
640
论文数: 392
被引数: 0
U
university of california san francisco
学者数:
5.3W
论文数: 4.0W
被引数: 67
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University of California System
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37.5W
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University of Vienna
学者数:
1.7W
论文数: 1.6W
被引数: 40
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