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A data-driven framework reconstructs the molecular continuum of human MASLD progression

delete2026-07-14
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OA
AI
I
Ioannis Kamzolas
T
Thodoris Koutsandreas
C
Charlie George Barker
A
Anna Vathrakokoili Pournara
H
Hazel Weston
N
Naoto Fujiwara
Y
Yujin Hoshida
Q
Quentin M. Anstee
M
Michele Vacca
I
Irene Papatheodorou
A
Antonio Vidal‐Puig *
E
Evangelia Petsalaki *
DOI:10.1038/s42255-026-01543-7delete
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Abstract

Abstract

En 中文
Metabolic dysfunction-associated steatotic liver disease (MASLD) progresses along a continuum from simple steatosis to steatohepatitis, fibrosis, cirrhosis and hepatocellular carcinoma. However, current clinical and research frameworks rely primarily on static, histology-defined stages that fail to capture the continuous nature of disease progression. Here, we present a data-driven framework that reconstructs MASLD progression as a continuous molecular trajectory from cross-sectional liver transcriptomic profiles. By positioning patients along this trajectory, we move beyond conventional stage-based classifications and resolve the ordered activation of regulatory programmes, signalling pathways and cellular remodelling processes underlying disease progression. To enable non-invasive patient stratification, we integrate the inferred molecular trajectory with paired liver-plasma proteomics data and identify a 57-gene plasma-accessible biomarker panel that accurately predicts advanced fibrosis and continuously positions patients along the disease trajectory across independent cohorts, outperforming established non-invasive clinical scores. Together, this work establishes a generalizable trajectory-based framework for understanding MASLD pathophysiology and provides a foundation for mechanistically informed biomarker discovery, precision staging and stage-aware therapeutic prioritization. A trajectory-based molecular framework reveals coordinated temporal shifts in metabolic, inflammatory and fibrogenic mechanisms across the human MASLD spectrum.
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Journal

Nature Metabolism cover
Nature Metabolism
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20.8
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1.6K
Citations:
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M
Mie University
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newcastle university
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wellcome genome campus
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University of Texas Southwestern Medical Center
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