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A guide to systems-level immunomics

delete2022-09-22
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OA
AI
L
Lorenzo Bonaguro
J
Jonas Schulte-Schrepping
T
Thomas Ulas
A
Anna C. Aschenbrenner
M
Marc Beyer
J
Joachim L. Schultze *
DOI:10.1038/s41590-022-01309-9delete
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Abstract

Abstract

En 中文
The immune system is highly complex and distributed throughout an organism, with hundreds to thousands of cell states existing in parallel with diverse molecular pathways interacting in a highly dynamic and coordinated fashion. Although the characterization of individual genes and molecules is of the utmost importance for understanding immune-system function, high-throughput, high-resolution omics technologies combined with sophisticated computational modeling and machine-learning approaches are creating opportunities to complement standard immunological methods with new insights into immune-system dynamics. Like systems immunology itself, immunology researchers must take advantage of these technologies and form their own diverse networks, connecting with researchers from other disciplines. This Review is an introduction and 'how-to guide' for immunologists with no particular experience in the field of omics but with the intention to learn about and apply these systems-level approaches, and for immunologists who want to make the most of interdisciplinary networks. The explosion of single-cell and systems approaches in immunology risks leaving the uninitiated behind. This guide to systems immunology is designed for immunologists who want an introduction to the area.
Keywords:
DIFFERENTIAL EXPRESSION ANALYSIS
SINGLE-CELL TRANSCRIPTOMICS
RNA-SEQ
CHROMATIN ACCESSIBILITY
REVEALS
OMICS
SIGNATURES
BIOLOGY
STATE
IMMUNOLOGY

Journal

Nature Immunology cover
Nature Immunology
IF:
27.6
Papers:
6.4K
Citations:
5.6W

Organization

H
Helmholtz Association
Scholars:
13.2W
Papers: 10.7W
Citations: 145
Cited Papers

Cited Papers

CRELD1 modulates homeostasis of the immune system in mice and humans
err2020-11-09
err15
PREAI
errBonaguro, Lorenzo; Koehne, Maren; Schmidleithner, Lisa; Schulte-Schrepping, Jonas; Warnat-Herresthal, Stefanie; Horne, Arik; Kern, Paul; Guenther, Patrick; ter Horst, Rob; Jaeger, Martin; Rahmouni, Souad; Georges, Michel; Falk, Christine S.; Li, Yang; Mass, Elvira; Beyer, Marc; Joosten, Leo A. B.; Netea, Mihai G.; Ulas, Thomas; Schultze, Joachim L.; Aschenbrenner, Anna C.
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Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
err2017-12-11
err606
errOAAI
errKang, Hyun Min; Subramaniam, Meena; Targ, Sasha; Michelle Nguyen; Maliskova, Lenka; McCarthy, Elizabeth; Wan, Eunice; Wong, Simon; Byrnes, Lauren; Lanata, Cristina M.; Gate, Rachel E.; Mostafavi, Sara; Marson, Alexander; Zaitlen, Noah; Criswell, Lindsey A.; Ye, Chun Jimmie
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Emerging role of post-translational modifications in chronic kidney disease and cardiovascular disease
err2015-04-09
err0
PREAI
errPrathibha R. Gajjala; Danilo Fliser; Thimoteus Speer; Vera Jankowski; Joachim Jankowski
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Shock excitation of the emission-line filaments in Centaurus A
err1993-09-01
err0
PREAI
errRalph S. Sutherland; Geoffrey V. Bicknell; Michael A. Dopita
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A Fixed-Point Neural Network Architecture for Speech Applications on Resource Constrained Hardware
err2016-11-25
err0
PREAI
errMohit Shah; Sairam Arunachalam; Jingcheng Wang; David Blaauw; Dennis Sylvester; Hun-Seok Kim; Jae-sun Seo; Chaitali Chakrabarti
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CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes
err2020-02-26
err1.8K
errOAAI
errEfremova, Mirjana; Vento-Tormo, Miquel; Teichmann, Sarah A.; Vento-Tormo, Roser
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Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states
err2021-11-22
err78
errOAAI
errTriana, Sergio; Vonficht, Dominik; Jopp-Saile, Lea; Raffel, Simon; Lutz, Raphael; Leonce, Daniel; Antes, Magdalena; Hernandez-Malmierca, Pablo; Ordonez-Rueda, Diana; Ramasz, Beata; Boch, Tobias; Jann, Johann-Christoph; Nowak, Daniel; Hofmann, Wolf-Karsten; Mueller-Tidow, Carsten; Huebschmann, Daniel; Alexandrov, Theodore; Benes, Vladimir; Trumpp, Andreas; Paulsen, Malte; Velten, Lars; Haas, Simon
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Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
err2015-10-12
err813
errOAAI
errRotem, Assaf; Ram, Oren; Shoresh, Noam; Sperling, Ralph A.; Goren, Alon; Weitz, David A.; Bernstein, Bradley E.
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