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Artificial Intelligence Learns Protein Prediction
DOI:10.1101/cshperspect.a041458.png)
Abstract
En 中文
From AlphaGO over StableDiffusion to ChatGPT, the recent decade of exponential advances in artificial intelligence (AI) has been altering life. In parallel, advances in computational biology are beginning to decode the language of life: AlphaFold2 leaped forward in protein structure prediction, and protein language models (pLMs) replaced expertise and evolutionary information from multiple sequence alignments with information learned from reoccurring patterns in databases of billions of proteins without experimental annotations other than the amino acid sequences. None of those tools could have been developed 10 years ago; all will increase the wealth of experimental data and speed up the cycle from idea to proof. AI is affecting molecular and medical biology at giant steps, and the most important might be the leap toward more powerful protein design.
Keywords:
SECONDARY STRUCTURE
RESIDUE CONTACTS
LANGUAGE
IDENTIFICATION
ALIGNMENT
HOMOLOGY
Journal
IF:
10.1
Papers:
3.0K
Citations:
1.3W
Organization
Cited Papers
Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search
NATURE COMMUNICATIONS
IF15.7
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
NUCLEIC ACIDS RESEARCH
IF13.1
Protein embeddings and deep learning predict binding residues for various ligand classes
SCIENTIFIC REPORTS
IF3.9

