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Artificial Intelligence Transforming Post-Translational Modification Research

delete2024-12-31
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OA
AI
D
Doo Nam Kim
T
Tianzhixi Yin
T
Tong Zhang
A
Alexandria K. Im
J
John Cort
J
Jordan C. Rozum
D
David D. Pollock
W
Weijun Qian
S
Song Feng *
DOI:10.3390/bioengineering12010026delete
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Abstract

Abstract

En 中文
Post-Translational Modifications (PTMs) are covalent changes to amino acids that occur after protein synthesis, including covalent modifications on side chains and peptide backbones. Many PTMs profoundly impact cellular and molecular functions and structures, and their significance extends to evolutionary studies as well. In light of these implications, we have explored how artificial intelligence (AI) can be utilized in researching PTMs. Initially, rationales for adopting AI and its advantages in understanding the functions of PTMs are discussed. Then, various deep learning architectures and programs, including recent applications of language models, for predicting PTM sites on proteins and the regulatory functions of these PTMs are compared. Finally, our high-throughput PTM-data-generation pipeline, which formats data suitably for AI training and predictions is described. We hope this review illuminates areas where future AI models on PTMs can be improved, thereby contributing to the field of PTM bioengineering.
Keywords:
artificial intelligence
deep learning
machine learning
Post-Translational Modification
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Key information extracted from the uploaded paper, including a brief overview, abstract, background, key highlights, visual analysis, and future outlook.

Journal

B
Bioengineering
IF:
3.7
Papers:
5.9K
Citations:
1.3W

Organization

P
Pacific Northwest National Laboratory
Scholars:
9.0K
Papers: 6.3K
Citations: 14
U
united states department of energy (doe)
Scholars:
11.3W
Papers: 9.6W
Citations: 246