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Associative knowledge graphs for efficient sequence storage and retrieval
DOI:10.1016/j.cmpb.2025.108865.png)
Abstract
En 中文
• This paper presents a new method for building associative knowledge graphs (AKG). • The AKGs excel at storing and identifying sequential information. • Presented AKGs are highly effective for storing and recognizing sequences. • To recover sequences, we utilize contextual information. • Providing a portion of the sequence triggers the retrieval of the complete sequence. • We confirmed these relationships with various sequence experiments. • The method efficiently identifies miRNA sequences, as an example demonstrates. • We provide access to the SSAKG package for Python. • It allows to test the presented concept and use it in other projects. • We provide application examples on GitHub (user-friendly Jupyter notebooks).
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4.8
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7.0K
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