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bridgesampling: An R Package for Estimating Normalizing Constants

delete2020-01-01
delete145
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OA
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Q
Quentin F. Gronau *
H
Henrik Singmann
E
Eric‐Jan Wagenmakers
DOI:10.18637/jss.v092.i10delete
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Abstract

Abstract

En 中文
Statistical procedures such as Bayes factor model selection and Bayesian model averaging require the computation of normalizing constants (e.g., marginal likelihoods). These normalizing constants are notoriously difficult to obtain, as they usually involve high-dimensional integrals that cannot be solved analytically. Here we introduce an R package that uses bridge sampling (Meng and Wong 1996; Meng and Schilling 2002) to estimate normalizing constants in a generic and easy-to-use fashion. For models implemented in Stan, the estimation procedure is automatic. We illustrate the functionality of the package with three examples.
Keywords:
bridge sampling
marginal likelihood
model selection
Bayes factor
Warp-III

Journal

Journal of Statistical Software cover
Journal of Statistical Software
IF:
8.1
Papers:
622
Citations:
4.6W

Organization

U
university of amsterdam
Scholars:
6.0W
Papers: 5.1W
Citations: 94
U
University of Warwick
Scholars:
2.2W
Papers: 2.2W
Citations: 85