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Crystal structure prediction based on diffusion model and graph network optimization

delete2025-07-25
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PRE
AI
T
Tao Hong
杨炯 cover
杨炯 (Jiong Yang)
曹
曹桂新 (Guixin Cao) *
DOI:doi:10.1088/2515-7639/adeaeddelete
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Abstract

Abstract

En 中文
Accurately and quickly predicting the crystal structures of unknown materials can significantly accelerate the discovery of new materials. However, stable crystal structures only exist at the global minimum of formation energy, making optimization based on density functional theory calculations or graph neural networks (GNNs) surrogate models time-consuming due to the extensive search space. In this work, we propose a crystal structure prediction method called DiffOA, which combines a diffusion model with an optimization algorithm based on GNNs. By generating atomic coordinates through a diffusion process and minimizing the formation energy through an optimization process, DiffOA effectively reduces the searching space required for crystal structure prediction while respecting both the minimum energy principle and the symmetry of crystal structures. We evaluated our method on the prediction of crystal structures of 29 compounds and found that DiffOA achieves a speed three times faster while maintaining comparable performance to GNNs-based optimization method. The high efficiency and accuracy of DiffOA may open a new path for data-driven materials discovery.
Keywords:
crystal structure prediction
diffusion model
graph neural networks
optimization algorithm
materials discovery

Journal

J
Journal of Physics and Materials
IF:
4.3
Papers:
100
Citations:
2.0K

Organization

No organization information available
Cited Papers

Cited Papers

Exploring the Structural Complexity of Intermetallic Compounds by an Adaptive Genetic Algorithm
err2014-01-28
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errX. Zhao; M. C. Nguyen; W. Y. Zhang; C. Z. Wang; M. J. Kramer; D. J. Sellmyer; X. Z. Li; F. Zhang; L. Q. Ke; V. P. Antropov; K. M. Ho
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How to predict very large and complex crystal structures
err2010-09-01
err188
PREAI
errLyakhov, Andriy O.; Oganov, Artem R.; Valle, Mario
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A generative model for inorganic materials design
errNATURE
IF48.5
err2025-01-16
err26
PREAI
errZeni, Claudio; Pinsler, Robert; Zuegner, Daniel; Fowler, Andrew; Horton, Matthew; Wang, Zilong; Shysheya, Aliaksandra; Crabbe, Jonathan; Ueda, Shoko; Sordillo, Roberto; Smith, Jake; Nguyen, Bichlien; Schulz, Hannes; Lewis, Sarah; Huang, Chin-Wei; Lu, Ziheng; Zhou, Yichi; Yang, Han; Hao, Hongxia; Li, Jielan; Yang, Chunlei; Li, Wenjie; Tomioka, Ryota; Xie, Tian
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MAGUS: machine learning and graph theory assisted universal structure searcher
err2023-05-08
err38
errOAAI
errWang, Junjie; Gao, Hao; Han, Yu; Ding, Chi; Pan, Shuning; Wang, Yong; Jia, Qiuhan; Wang, Hui-Tian; Xing, Dingyu; Sun, Jian
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Commentary: The Materials Project: A materials genome approach to accelerating materials innovation
err2013-07-18
err9.0K
errOAAI
errJain, Anubhav; Shyue Ping Ong; Hautier, Geoffroy; Chen, Wei; Richards, William Davidson; Dacek, Stephen; Cholia, Shreyas; Gunter, Dan; Skinner, David; Ceder, Gerbrand; Persson, Kristin A.
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