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DeepAlloWeb: A Web Server for Interactive Allosteric Pockets Prediction Using Protein Language Model

delete2026-05-18
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PRE
AI
M
Moaaz Khokhar
Ö
Özlem Keskin *
A
Attila Gürsoy *
DOI:10.1016/j.jmb.2026.169863delete
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Abstract

Abstract

En 中文
• DeepAlloWeb may support drug discovery research by accurately predicting allosteric pockets, which in turn could help targeted therapy developments. • The webserver integrates a fine-tuned protein language model (ProtBERT) with multitask learning on allosteric pockets data. • Users can visualize the pLM attention among residues, which can provide information as to which residues are more important for a certain allosteric pocket residue for a certain layer and head of the pLM.
Keywords:
DeepAlloWeb
allosteric pockets
protein language model
drug discovery
multitask learning

Journal

Journal of Molecular Biology cover
Journal of Molecular Biology
IF:
4.5
Papers:
657
Citations:
5.4W

Organization

K
koç university
Scholars:
168
Papers: 71
Citations: 0
Cited Papers

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