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EFFICIENT MESH MANAGEMENT IN FIREDRAKE USING PETSC DMPLEX
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DOI：10.1137/15M1026092.png)
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Abstract
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The use of composable abstractions allows the application of new and established algorithms to a wide range of problems, while automatically inheriting the benefits of well-known performance optimizations. This work highlights the composition of the PETSc DMPlex domain topology abstraction with the Firedrake automated finite element system to create a PDE solving environment that combines expressiveness, flexibility, and high performance. We describe how Firedrake utilizes DMPlex to provide the indirection maps required for finite element assembly, while supporting various mesh input formats and runtime domain decomposition. In particular, we describe how DMPlex and its accompanying data structures allow the generic creation of user-defined discretizations, while utilizing data layout optimizations that improve cache coherency and ensure overlapped communication during assembly computation.
Keywords:
mesh
topology
partitioning
renumbering
Firedrake
PETSc
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