.png){kind=icon}
.png){kind=icon}
Return
Enhanced Representation-Based Sampling for the Efficient Generation of Data Sets for Machine-Learned Interatomic Potentials
.png){kind=icon}
PRE
AI
DOI：10.1021/acs.jctc.5c01767.png)
.png){kind=icon}
Original request for help.png){kind=icon}
Share.png){kind=icon}
Save
Abstract
En 中文
In this work, we present enhanced representation-based sampling (ERBS), a novel enhanced sampling method designed to generate structurally diverse training data sets for machine-learned interatomic potentials. ERBS automatically identifies collective variables by dimensionality reduction of atomic descriptors and applies a bias potential inspired by the On-the-Fly probability enhanced sampling framework. We highlight the ability of Gaussian moment descriptors to capture collective molecular motions and explore the impact of biasing parameters using alanine dipeptide as a benchmark system. We show that free energy surfaces can be reconstructed with high fidelity using only short biased trajectories as training data. Further, we apply the method to the iterative construction of a liquid water data set and compare the quality of simulated self-diffusion coefficients for models trained with molecular dynamics and ERBS data. Further, we active-learn models for liquid water with and without enhanced sampling and compare the quality of simulated self-diffusion coefficients. The self-diffusion coefficients closely match those simulated with a reference model at a significantly reduced data set size. Finally, we compare the sampling behavior of enhanced sampling methods by benchmarking the mean squared displacements of BMIM+BF4– trajectories simulated with uncertainty-driven dynamics and ERBS and find that the latter significantly increases the exploration of configurational space.
Journal
IF:
5.5
Papers:
1.1W
Citations:
5.4W