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Genomic evolution and re-emergence of a multidrug-resistant Clostridioides difficile RT027 clone with reduced vancomycin susceptibility driving a prolonged hospital outbreak

delete2026-03-17
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OA
AI
J
Joana Isidro *
F
Filipa Dionísio *
F
Frederico Alves *
S
Soraia Almeida *
C
Cláudia Santos *
M
Manuel Mota Santos *
E
ERNESTINA SILVA REIS *
J
Júlio R Oliveira *
J
João Paulo Gomes *
M
Mónica Oleastro *
DOI:10.1080/22221751.2026.2640707delete
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Abstract

Abstract

En 中文
Following an extended period of declining prevalence of the epidemic Clostridioides difficile ribotype 027 (RT027) in Portugal, a genetically distinct, multidrug-resistant (MDR) RT027 strain with reduced susceptibility to vancomycin has emerged, causing a 15-month outbreak. This investigation provides epidemiological and genomic evidence for renewed circulation and evolutionary adaptation of this high-risk lineage. A comprehensive outbreak investigation was conducted in a tertiary-care hospital in northern Portugal between 2023 and 2025. Epidemiological and clinical data, antimicrobial exposures, and infection-control measures were analysed. Whole-genome sequencing (WGS) was performed to characterize the outbreak clone. Sixty-six RT027 C. difficile infection (CDI) cases were confirmed, with incidence peaking at 5.46 cases per 10,000 patient-bed days in April 2024. WGS revealed an unusual accumulation of AMR determinants conferring a broad MDR phenotype. Notably, all isolates harboured the VanR T115A substitution, a rare mutation previously linked to reduced vancomycin susceptibility, raising concerns regarding evolving antimicrobial tolerance within RT027. The close relatedness to 2016–2018 USA isolates suggests a recent emergence of this clone. Transmission was facilitated by structural constraints, limited isolation capacity and shared sanitary facilities. This prolonged outbreak documents the re-emergence and genomic evolution of a hypervirulent RT027 lineage, characterized by a concerning expansion of antimicrobial resistance and decreased vancomycin susceptibility and a high recurrence rate (25%). These findings highlight the ongoing adaptive potential of C. difficile under antimicrobial pressure and underscore the need for strengthened surveillance, genomic monitoring, and infection-prevention strategies to mitigate re-establishment of epidemic RT027 strains in Europe and beyond.
Keywords:
Clostridioides difficile hypervirulent RT027 re-emergence
multidrug-resistance
Vancomycin resistance VanR T115A mutation
healthcare-associated outbreak
genomic surveillance

Journal

E
Emerging Microbes & Infections
IF:
0
Papers:
1
Citations:
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Organization

N
national institute of health doutor ricardo jorge
Scholars:
33
Papers: 9
Citations: 0
U
uls santo antonio
Scholars:
5
Papers: 2
Citations: 0
S
santo antonio
Scholars:
1
Papers: 1
Citations: 0
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