arrow
Return

Graph-EAM: An Interpretable and Efficient Graph Neural Network Potential Framework

delete2023-08-15
delete1
PRE
AI
J
Jun Yang
Z
Zhitao Chen
H
Hong Sun
A
Amit Samanta *
DOI:10.1021/acs.jctc.3c00344delete
deleteOriginal
deleteOriginal request for help
deleteShare
deleteSave
Abstract

Abstract

En 中文
The development of deep learning interatomic potentialshas enabledefficient and accurate computations in quantum chemistry and materialsscience, circumventing computationally expensive ab initio calculations. However, the huge number of learnable parameters indeep learning models and their complex architectures hinder physicalinterpretability and affect the robustness of the derived potential.In this work, we propose graph-EAM, a lightweight graph neural network(GNN) inspired by the empirical embedded atom method to model theinteratomic potential of single-element structures. Four materialsystems: platinum, niobium, silicon, and amorphous-carbon, for whichquantum simulation data sets are publicly available, are examinedto demonstrate that graph-EAM can achieve high energy and force predictionaccuracy comparable or better than existing state-of-the-artmachine learning models with much fewer parameters. It is alsoshown that the explicit inclusion of the angular information via three-bodyatomic density increases the prediction accuracy. The accuracy andefficiency of potentials obtained from graph-EAM can help acceleratethe molecular dynamics simulation.
Keywords:
GENERALIZED GRADIENT APPROXIMATION
EMBEDDED-ATOM-METHOD
CARBON
MOLECULES
SURFACES
SIMULATION
CHEMISTRY
HYDROGEN
SOLIDS

Journal

Journal of Chemical Theory and Computation cover
Journal of Chemical Theory and Computation
IF:
5.5
Papers:
1.1W
Citations:
5.4W

Organization

U
united states department of energy (doe)
Scholars:
11.3W
Papers: 9.6W
Citations: 246
Cited Papers

Cited Papers

Synthesis and structure of free-standing germanium quantum dots and their application in live cell imaging
err2015-01-01
err0
errOAAI
errAli Karatutlu; Mingying Song; Ann P. Wheeler; Osman Ersoy; William R. Little; Yuanpeng Zhang; Pascal Puech; Filippo S. Boi; Zofia Luklinska; Andrei V. Sapelkin
errShare
errSave
Type-II Weyl semimetals
err2015-11-25
err0
errOAAI
errAlexey A. Soluyanov; Dominik Gresch; Zhijun Wang; QuanSheng Wu; Matthias Troyer; Xi Dai; B. Andrei Bernevig
errShare
errSave
E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials
err2022-05-04
err648
errOAAI
errBatzner, Simon; Musaelian, Albert; Sun, Lixin; Geiger, Mario; Mailoa, Jonathan P.; Kornbluth, Mordechai; Molinari, Nicola; Smidt, Tess E.; Kozinsky, Boris
errShare
errSave
Comparison of permutationally invariant polynomials, neural networks, and Gaussian approximation potentials in representing water interactions through many-body expansions
err2018-04-09
err180
errOAAI
errNguyen, Thuong T.; Szekely, Eszter; Imbalzano, Giulio; Behler, Joerg; Csanyi, Gabor; Ceriotti, Michele; Goetz, Andreas W.; Paesani, Francesco
errShare
errSave
Machine Learning a General-Purpose Interatomic Potential for Silicon
err2018-12-14
err480
errOAAI
errBartok, Albert P.; Kermode, James; Bernstein, Noam; Csanyi, Gabor
errShare
errSave
researcher View more