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Leveraging Language Model Multitasking To Predict C-H Borylation Selectivity

delete2024-05-06
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OA
AI
R
Ruslan Kotlyarov
K
Konstantinos Papachristos
G
Geoffrey P. F. Wood
J
Jonathan M. Goodman *
DOI:10.1021/acs.jcim.4c00137delete
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Abstract

Abstract

En 中文
C-H borylation is a high-value transformation in the synthesis of lead candidates for the pharmaceutical industry because a wide array of downstream coupling reactions is available. However, predicting its regioselectivity, especially in drug-like molecules that may contain multiple heterocycles, is not a trivial task. Using a data set of borylation reactions from Reaxys, we explored how a language model originally trained on USPTO_500_MT, a broad-scope set of patent data, can be used to predict the C-H borylation reaction product in different modes: product generation and site reactivity classification. Our fine-tuned T5Chem multitask language model can generate the correct product in 79% of cases. It can also classify the reactive aromatic C-H bonds with 95% accuracy and 88% positive predictive value, exceeding purpose-developed graph-based neural networks.
Keywords:
CROSS-COUPLING REACTIONS
SMILES
ACIDS
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Journal

Journal of Chemical Information and Modeling cover
Journal of Chemical Information and Modeling
IF:
5.3
Papers:
9.1K
Citations:
4.0W

Organization

U
University of Cambridge
Scholars:
7.7W
Papers: 7.1W
Citations: 13.7W