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MolPIF: a parameter interpolation flow model for molecule generation

delete2026-05-23
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OA
AI
Y
Yaowei Jin
J
Junjie Wang
Y
Yufan Tang
W
Wenkai Xiang
D
Duanhua Cao
D
Dan Teng
Z
Zhehuan Fan
J
Jiacheng Xiong
X
Xia Sheng
C
Chuanlong Zeng
D
Duo An
M
Mingyue Zheng
S
Shuangjia Zheng
Q
Qian Shi *
DOI:10.1093/bioinformatics/btag323delete
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Abstract

Abstract

En 中文
Structure-based drug design (SBDD) has advanced with deep generative models, but bridging the gap between continuous atomic coordinates and discrete atom types remains a challenge. Current approaches, such as diffusion and flow matching models, often fail to unify these heterogeneous modalities, relying on separate strategies or ill-fitting Euclidean metrics for discrete variables. This lack of a consistent framework limits generative models’ ability to capture the geometric and chemical structure of protein–ligand complexes.

Journal

Bioinformatics cover
Bioinformatics
IF:
5.4
Papers:
1.1K
Citations:
17.9W

Organization

F
fudan university
Scholars:
11.7W
Papers: 7.7W
Citations: 121
L
Lingang Laboratory
Scholars:
404
Papers: 177
Citations: 8
C
chinese academy of sciences
Scholars:
56.5W
Papers: 44.9W
Citations: 704
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