Multi-level pooling encoder-decoder convolution neural network for MRI reconstruction

Sarattha Karnjanapreechakorn

doi:10.7717/peerj-cs.934

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Multi-level pooling encoder-decoder convolution neural network for MRI reconstruction

2022-03-30

Sarattha Karnjanapreechakorn

Worapan Kusakunniran *

Thanongchai Siriapisith

Pairash Saiviroonporn

DOI：10.7717/peerj-cs.934

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Abstract

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MRI reconstruction is one of the critical processes of MRI machines, along with the acquisition. Due to a slow processing time of signal acquiring, parallel imaging and reconstruction techniques are applied for acceleration. To accelerate the acquisition process, fewer raw data are sampled simultaneously with all RF coils acquisition. Then, the reconstruction uses under-sampled data from all RF coils to restore the final MR image that resembles the fully sampled MR image. These processes have been a traditional procedure inside the MRI system since the invention of the multi-coils MRI machine. This paper proposes the deep learning technique with a lightweight network. The deep neural network is capable of generating the high-quality reconstructed MR image with a high peak signal-to-noise ratio (PSNR). This also opens a high acceleration factor for MR data acquisition. The lightweight network is called Multi-Level Pooling Encoder-Decoder Net (MLPED Net). The proposed network outperforms the traditional encoder-decoder networks on 4-fold acceleration with a significant margin on every evaluation metric. The network can be trained end-to-end, and it is a lightweight structure that can reduce training time significantly. Experimental results are based on a publicly available MRI Knee dataset from the fastMRl competition.

Keywords:

MRI reconstruction

Multi-level pooling

Encoder-decoder CNN

Fast MRI

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