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Nature Inspired Algorithms for Solving Multiple Sequence Alignment Problem: A Review

delete2022-06-03
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PRE
AI
T
Tirumala Paruchuri
G
Gangadhara Rao Kancharla
S
Suresh Dara *
R
Rohit Yadav
S
Surender Singh Jadav *
S
Swetha Dhamercherla
A
Ankit Vidyarthi *
DOI:10.1007/s11831-022-09769-wdelete
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Abstract

Abstract

En 中文
Multiple Sequence Assignment (MSA) problem is considered an NP-hard problem due to its nature of alignment of more than three or more biological sequences like protein or nucleic acid. Many sequence alignment tools are used to identify regions of similarity that may indicate functional, structural, and/or evolutionary relationships between sequences. Many evolutionary computation techniques have successfully been applied for solving MSA problem. This article presented a state of art review about nature-inspired algorithms, furthermore implemented a few algorithms such as GA, PSO, GSA, BBO, and CRO which are used to solve MSA problem, and in addition to presenting their experimental results along with analysis.
Keywords:
GENETIC ALGORITHM
SECONDARY STRUCTURE
SEARCH
OPTIMIZATION
DEFINITION

Journal

Archives of Computational Methods in Engineering cover
Archives of Computational Methods in Engineering
IF:
12.1
Papers:
1.8K
Citations:
1.2W

Organization

C
csir - indian institute of chemical technology (iict)
Scholars:
1.7K
Papers: 1.5K
Citations: 0
C
council of scientific & industrial research (csir) - india
Scholars:
4.7W
Papers: 3.9W
Citations: 37
A
Acharya Nagarjuna University
Scholars:
774
Papers: 698
Citations: 393
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