arrow
Return

Porting Fragmentation Methods to Graphical Processing Units Using an OpenMP Application Programming Interface: Offloading the Fock Build for Low Angular Momentum Functions

delete2023-04-03
delete11
delete
OA
AI
B
Buu Q. Pham
M
Melisa Alkan
M
Mark S. Gordon *
DOI:10.1021/acs.jctc.2c01137delete
deleteOriginal
deleteOriginal request for help
deleteShare
deleteSave
Abstract

Abstract

En 中文
A framework to offload four-index two-electron repulsion integrals to graphical processing units (GPUs) using OpenMP is discussed. The method has been applied to the Fock build for low angular momentum s and p functions in both the restricted Hartree-Fock (RHF) and in the effective fragment molecular orbital (EFMO) framework. Benchmark calculations for the GPU code for the pure RHF method show an increasing speedup relative to the existing OpenMP CPU code in GAMESS from 1.04 to 52x for clusters of 70-569 water molecules. The parallel efficiency on 24 NVIDIA V100 GPU boards also increases when increasing the system size: from 75 to 94% for water clusters that contain 303-1120 molecules. In the EFMO framework, the GPU Fock build shows a high linear scalability up to 4608 V100s with a parallel efficiency of 96% for calculations on a solvated mesoporous silica nanoparticle system with similar to 67,000 basis functions.
Keywords:
MOLECULAR-ORBITAL METHOD
ELECTRON REPULSION INTEGRALS
APPROXIMATE COMPUTATIONAL METHOD
MANY-BODY EXPANSION

Journal

Journal of Chemical Theory and Computation cover
Journal of Chemical Theory and Computation
IF:
5.5
Papers:
1.1W
Citations:
5.4W

Organization

I
Iowa State University
Scholars:
2.1W
Papers: 1.8W
Citations: 2.5W