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ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies

delete2020-08-06
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OA
AI
A
Anna Calinawan *
X
Xiaoyu Song
J
Jiayi Ji
S
Saravana M. Dhanasekaran
F
Francesca Petralia
P
Pei Wang
B
Boris Reva
DOI:10.1002/pmic.201900359delete
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Abstract

Abstract

En 中文
The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generated extensive multi-omics data resources of deep proteogenomic profiles for multiple cancer types. To enable the broader community of biological and medical researchers to intuitively query, explore, and download data and analysis results from various CPTAC projects, a prototype user-friendly web application called ProTrack is built with the CPTAC clear cell renal cell carcinoma (ccRCC) data set (). Here the salient features of this application which provides a dynamic, comprehensive, and granular visualization of the rich proteogenomic data is described.
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Journal

Proteomics cover
Proteomics
IF:
3.9
Papers:
7.6K
Citations:
1.1W

Organization

I
Icahn School of Medicine at Mount Sinai
Scholars:
4.6W
Papers: 3.4W
Citations: 58
U
university of michigan system
Scholars:
9.1W
Papers: 8.6W
Citations: 133
Cited Papers

Cited Papers

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A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data
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errBroom, Bradley M.; Ryan, Michael C.; Brown, Robert E.; Ikeda, Futa; Stucky, Mark; Kane, David W.; Melott, James; Wakefield, Chris; Casasent, Tod D.; Akbani, Rehan; Weinstein, John N.
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PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data
err2018-05-25
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errHernandez-de-Diego, Rafael; Tarazona, Sonia; Martinez-Mira, Carlos; Balzano-Nogueira, Leandro; Furio-Tari, Pedro; Pappas Jr, Georgios J.; Conesa, Ana
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