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Quantum processor-inspired machine learning in the biomedical sciences

delete2021-06-01
delete12
delete
OA
AI
R
Richard Y. Li
S
Sharvari Gujja
S
Sweta R. Bajaj
O
Omar Gamel
N
Nicholas A. Cilfone
J
Jeffrey R. Gulcher
D
Daniel A. Lidar *
T
Thomas W. Chittenden *
DOI:10.1016/j.patter.2021.100246delete
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Abstract

Abstract

En 中文
Recent advances in high-throughput genomic technologies coupled with exponential increases in computer processing and memory have allowed us to interrogate the complex molecular underpinnings of human disease from a genome-wide perspective. While the deluge of genomic information is expected to increase, a bottleneck in conventional high-performance computing is rapidly approaching. Inspired by recent advances in physical quantum processors, we evaluated several unconventional machine-learning (ML) strategies on actual human tumor data, namely Ising-type'' methods, whose objective function is formulated identical to simulated annealing and quantum annealing. We show the efficacy of multiple Ising-type ML algorithms for classification of multi-omics human cancer data from The Cancer Genome Atlas, comparing these classifiers to a variety of standard MLmethods. Our results indicate that Ising-typeML offers superior classification performance with smaller training datasets, thus providing compelling empirical evidence for the potential future application of unconventional computing approaches in the biomedical sciences.
Keywords:
MOLECULAR CLASSIFICATION
RIDGE REGRESSION
CANCER
OPTIMIZATION
SELECTION
GENOMICS
LATTICE
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H
Harvard University
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26.5W
Papers: 22.0W
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U
university of southern california
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Citations: 51
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