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RamanSPy: An Open-Source Python Package for Integrative Raman Spectroscopy Data Analysis

delete2024-05-15
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OA
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D
Dimitar Georgiev
S
Simon Vilms Pedersen
R
Ruoxiao Xie
A
A. Fernandez-Galiana
M
Molly M. Stevens *
M
Mauricio Barahona *
DOI:10.1021/acs.analchem.4c00383delete
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Abstract

Abstract

En 中文
Raman spectroscopy is a nondestructive and label-free chemical analysis technique, which plays a key role in the analysis and discovery cycle of various branches of science. Nonetheless, progress in Raman spectroscopic analysis is still impeded by the lack of software, methodological and data standardization, and the ensuing fragmentation and lack of reproducibility of analysis workflows thereof. To address these issues, we introduce RamanSPy, an open-source Python package for Raman spectroscopic research and analysis. RamanSPy provides a comprehensive library of tools for spectroscopic analysis that supports day-to-day tasks, integrative analyses, the development of methods and protocols, and the integration of advanced data analytics. RamanSPy is modular and open source, not tied to a particular technology or data format, and can be readily interfaced with the burgeoning ecosystem for data science, statistical analysis, and machine learning in Python. RamanSPy is hosted at https://github.com/barahona-research-group/RamanSPy, supplemented with extended online documentation, available at https://ramanspy.readthedocs.io, that includes tutorials, example applications, and details about the real-world research applications presented in this paper.
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Journal

Analytical Chemistry cover
Analytical Chemistry
IF:
6.7
Papers:
4.7W
Citations:
15.9W

Organization

I
Imperial College London
Scholars:
8.3W
Papers: 7.3W
Citations: 11.1W
Cited Papers

Cited Papers

Applications of Raman spectroscopy in pharmaceutical analysis
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errVankeirsbilck, T; Vercauteren, A; Baeyens, W; Van der Weken, G; Verpoort, F; Vergote, G; Remon, JP
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Quantitative volumetric Raman imaging of three dimensional cell cultures
err2017-03-22
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errKallepitis, Charalambos; Bergholt, Mads S.; Mazo, Manuel M.; Leonardo, Vincent; Skaalure, Stacey C.; Maynard, Stephanie A.; Stevens, Molly M.
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Different Drought Legacies of Rain-Fed and Irrigated Croplands in a Typical Russian Agricultural Region
err2020-05-26
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errYuanhuizi He; Fang Chen; Huicong Jia; Lei Wang; Valery G. Bondur
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High-Throughput Molecular Imaging via Deep-Learning-Enabled Raman Spectroscopy
err2021-11-19
err48
errOAAI
errHorgan, Conor C.; Jensen, Magnus; Nagelkerke, Anika; St-Pierre, Jean-Philippe; Vercauteren, Tom; Stevens, Molly M.; Bergholt, Mads S.
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