arrow
Return

Realistic image normalization for multi-Domain segmentation

delete2021-12-01
delete12
delete
OA
AI
P
Pierre-Luc Delisle *
B
Benoit Anctil-Robitaille
C
Christian Desrosiers
H
Hervé Lombaert
DOI:10.1016/j.media.2021.102191delete
deleteOriginal
deleteOriginal request for help
deleteShare
deleteSave
Abstract

Abstract

En 中文
Image normalization is a building block in medical image analysis. Conventional approaches are customarily employed on a per-dataset basis. This strategy, however, prevents the current normalization algorithms from fully exploiting the complex joint information available across multiple datasets. Consequently, ignoring such joint information has a direct impact on the processing of segmentation algorithms. This paper proposes to revisit the conventional image normalization approach by, instead, learning a common normalizing function across multiple datasets. Jointly normalizing multiple datasets is shown to yield consistent normalized images as well as an improved image segmentation when intensity shifts are large. To do so, a fully automated adversarial and task-driven normalization approach is employed as it facilitates the training of realistic and interpretable images while keeping performance on par with the state-of-the-art. The adversarial training of our network aims at finding the optimal transfer function to improve both, jointly, the segmentation accuracy and the generation of realistic images. We have evaluated the performance of our normalizer on both infant and adult brain images from the iSEG, MRBrainS and ABIDE datasets. The results indicate that our contribution does provide an improved realism to the normalized images, while retaining a segmentation accuracy at par with the state-of-the-art learnable normalization approaches. (c) 2021 Elsevier B.V. All rights reserved.
Keywords:
3D MRI
Brain segmentation
Data harmonization
Generative adversarial networks
Intensity normalization

Journal

Medical Image Analysis cover
Medical Image Analysis
IF:
11.8
Papers:
3.9K
Citations:
2.4W

Organization

U
university of quebec
Scholars:
2.0W
Papers: 1.9W
Citations: 19
Cited Papers

Cited Papers

Psychiatric Aspects of the Eosinophilia-Myalgia Syndrome
err1995-01-01
err0
errOAAI
errSteven A. Epstein; Lois Krahn; Daniel J. Clauw; Arminda P. Gomes Susan Weigert; Richard L. Goldberg
errShare
errSave
errShare
errSave
Evaluating White Matter Lesion Segmentations with Refined SOrensen-Dice Analysis
err2020-05-19
err117
errOAAI
errCarass, Aaron; Roy, Snehashis; Gherman, Adrian; Reinhold, Jacob C.; Jesson, Andrew; Arbel, Tal; Maier, Oskar; Handels, Heinz; Ghafoorian, Mohsen; Platel, Bram; Birenbaum, Ariel; Greenspan, Hayit; Pham, Dzung L.; Crainiceanu, Ciprian M.; Calabresi, Peter A.; Prince, Jerry L.; Roncal, William R. Gray; Shinohara, Russell T.; Oguz, Ipek
errShare
errSave
Disease Resistance
err2022-06-03
err0
PREAI
errMichael Ayliffe; Ming Luo; Justin Faris; Evans Lagudah
errShare
errSave
Benchmark on Automatic Six-Month-Old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge
err2019-09-01
err122
errOAAI
errWang, Li; Nie, Dong; Li, Guannan; Puybareau, Elodie; Dolz, Jose; Zhang, Qian; Wang, Fan; Xia, Jing; Wu, Zhengwang; Chen, Jia-Wei; Thung, Kim-Han; Toan Duc Bui; Shin, Jitae; Zeng, Guodong; Zheng, Guoyan; Fonov, Vladimir S.; Doyle, Andrew; Xu, Yongchao; Moeskops, Pim; Pluim, Josien P. W.; Desrosiers, Christian; Ben Ayed, Ismail; Sanroma, Gerard; Benkarim, Oualid M.; Casamitjana, Adria; Vilaplana, Veronica; Lin, Weili; Li, Gang; Shen, Dinggang
errShare
errSave
HyperDense-Net: A Hyper-Densely Connected CNN for Multi-Modal Image Segmentation
err2019-05-01
err376
errOAAI
errDolz, Jose; Gopinath, Karthik; Yuan, Jing; Lombaert, Herve; Desrosiers, Christian; Ben Ayed, Ismail
errShare
errSave
Learning normalized inputs for iterative estimation in medical image segmentation
err2018-02-01
err188
errOAAI
errDrozdzal, Michal; Chartrand, Gabriel; Vorontsov, Eugene; Shakeri, Mahsa; Di Jorio, Lisa; Tang, An; Romero, Adriana; Bengio, Yoshua; Pal, Chris; Kadoury, Samuel
errShare
errSave
Volumetric Analysis from a Harmonized Multisite Brain MRI Study of a Single Subject with Multiple Sclerosis
err2017-06-22
err86
errOAAI
errShinohara, R. T.; Oh, J.; Nair, G.; Calabresi, P. A.; Davatzikos, C.; Doshi, J.; Henry, R. G.; Kim, G.; Linn, K. A.; Papinutto, N.; Pelletier, D.; Pham, D. L.; Reich, D. S.; Rooney, W.; Roy, S.; Stern, W.; Tummala, S.; Yousuf, F.; Zhu, A.; Sicotte, N. L.; Bakshi, R.
errShare
errSave
researcher View more