arrow
Return

Statistical methods for gene-environment interaction analysis

delete2023-10-05
delete6
delete
OA
AI
J
Jiacheng Miao
Y
Yixuan Wu
Q
Qiongshi Lu *
DOI:10.1002/wics.1635delete
deleteOriginal
deleteOriginal request for help
deleteShare
deleteSave
Abstract

Abstract

En 中文
Most human complex phenotypes result from multiple genetic and environmental factors and their interactions. Understanding the mechanisms by which genetic and environmental factors interact offers valuable insights into the genetic architecture of complex traits and holds great potential for advancing precision medicine. The emergence of large population biobanks has led to the development of numerous statistical methods aiming at identifying gene-environment interactions (G x E). In this review, we present state-of-the-art statistical methodologies for G x E analysis. We will survey a spectrum of approaches for single-variant G x E mapping, followed by various techniques for polygenic G x E analysis. We conclude this review with a discussion on the future directions and challenges in G x E research.This article is categorized under: Applications of Computational Statistics > Genomics/Proteomics/Genetics Data: Types and Structure > Massive Data Statistical Models > Linear Models
Keywords:
gene-environment interaction (G x E)
precision medicine
statistical genetics

Journal

W
Wiley Interdisciplinary Reviews and Computational Statistics
IF:
5.4
Papers:
201
Citations:
5.1K

Organization

U
university of wisconsin madison
Scholars:
3.8W
Papers: 2.9W
Citations: 53
University of Wisconsin System cover
University of Wisconsin System
Scholars:
6.7W
Papers: 5.8W
Citations: 382
Cited Papers

Cited Papers

A linear mixed-model approach to study multivariate gene-environment interactions
err2018-11-26
err102
errOAAI
errMoore, Rachel; Casale, Francesco Paolo; Bonder, Marc Jan; Horta, Danilo; Franke, Lude; Barroso, Ines; Stegle, Oliver
errShare
errSave
Partitioning heritability by functional annotation using genome-wide association summary statistics
err2015-09-28
err1.5K
errOAAI
errFinucane, Hilary K.; Bulik-Sullivan, Brendan; Gusev, Alexander; Trynka, Gosia; Reshef, Yakir; Loh, Po-Ru; Anttila, Verneri; Xu, Han; Zang, Chongzhi; Farh, Kyle; Ripke, Stephan; Day, Felix R.; Purcell, Shaun; Stahl, Eli; Lindstrom, Sara; Perry, John R. B.; Okada, Yukinori; Raychaudhuri, Soumya; Daly, Mark J.; Patterson, Nick; Neale, Benjamin M.; Price, Alkes L.
errShare
errSave
Amplification is the primary mode of gene-by-sex interaction in complex human traits
err2023-05-01
err25
errOAAI
errZhu, Carrie; Ming, Matthew J.; Cole, Jared M.; Edge, Michael D.; Kirkpatrick, Mark; Harpak, Arbel
errShare
errSave
Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank
err2019-08-02
err111
errOAAI
errWang, Huanwei; Zhang, Futao; Zeng, Jian; Wu, Yang; Kemper, Kathryn E.; Xue, Angli; Zhang, Min; Powell, Joseph E.; Goddard, Michael E.; Wray, Naomi R.; Visscher, Peter M.; McRae, Allan F.; Yang, Jian
errShare
errSave
A Robust Method Uncovers Significant Context-Specific Heritability in Diverse Complex Traits
err2020-01-01
err50
errOAAI
errDahl, Andy; Khiem Nguyen; Cai, Na; Gandal, Michael J.; Flint, Jonathan; Zaitlen, Noah
errShare
errSave
Genetic Endowments and Wealth Inequality
err2020-04-01
err61
errOAAI
errBarth, Daniel; Papageorge, Nicholas W.; Thom, Kevin
errShare
errSave
Bilateral Internal Auditory Canal Melanoma
err2012-12-01
err0
errOAAI
errRachel E. Roditi; Priya Kesarwani; Eric M. Barker; Gabrielle A. Yeaney; Kevin A. Walter; Benjamin T. Crane
errShare
errSave
Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders
err2022-01-01
err62
errOAAI
errBlokland, Gabriella A. M.; Grove, Jakob; Chen, Chia-Yen; Cotsapas, Chris; Tobet, Stuart; Handa, Robert; St Clair, David; Lencz, Todd; Mowry, Bryan J.; Periyasamy, Sathish; Cairns, Murray J.; Tooney, Paul A.; Wu, Jing Qin; Kelly, Brian; Kirov, George; Sullivan, Patrick F.; Corvin, Aiden; Riley, Brien P.; Esko, Tonu; Milani, Lili; Jonsson, Erik G.; Palotie, Aarno; Ehrenreich, Hannelore; Begemann, Martin; Steixner-Kumar, Agnes; Sham, Pak C.; Iwata, Nakao; Weinberger, Daniel R.; Gejman, Pablo, V; Sanders, Alan R.; Buxbaum, Joseph D.; Rujescu, Dan; Giegling, Ina; Konte, Bettina; Hartmann, Annette M.; Bramon, Elvira; Murray, Robin M.; Pato, Michele T.; Lee, Jimmy; Melle, Ingrid; Molden, Espen; Ophoff, Roel A.; McQuillin, Andrew; Bass, Nicholas J.; Adolfsson, Rolf; Malhotra, Anil K.; Martin, Nicholas G.; Fullerton, Janice M.; Mitchell, Philip B.; Schofield, Peter R.; Forstner, Andreas J.; Degenhardt, Franziska; Schaupp, Sabrina; Comes, Ashley L.; Kogevinas, Manolis; Guzman-Parra, Jose; Reif, Andreas; Streit, Fabian; Sirignano, Lea; Cichon, Sven; Grigoroiu-Serbanescu, Maria; Hauser, Joanna; Lissowska, Jolanta; Mayoral, Fermin; Muller-Myhsok, Bertram; Schulze, Thomas G.; Nothen, Markus M.; Rietschel, Marcella; Kelsoe, John; Leboyer, Marion; Jamain, Stephane; Etain, Bruno; Bellivier, Frank; Vincent, John B.; Alda, Martin; O'Donovan, Claire; Cervantes, Pablo; Biernacka, Joanna M.; Frye, Mark; McElroy, Susan L.; Scott, Laura J.; Stahl, Eli A.; Landen, Mikael; Hamshere, Marian L.; Smeland, Olav B.; Djurovic, Srdjan; Vaaler, Arne E.; Andreassen, Ole A.; Baune, Bernhard T.; Air, Tracy; Preisig, Martin; Uher, Rudolf; Levinson, Douglas F.; Weissman, Myrna M.; Potash, James B.; Shi, Jianxin; Knowles, James A.; Perlis, Roy H.; Lucae, Susanne; Boomsma, Dorret, I; Penninx, Brenda W. J. H.; Hottenga, Jouke-Jan; de Geus, Eco J. C.; Willemsen, Gonneke; Milaneschi, Yuri; Tiemeier, Henning; Grabe, Hans J.; Teumer, Alexander; Van der Auwera, Sandra; Volker, Uwe; Hamilton, Steven P.; Magnusson, Patrik K. E.; Viktorin, Alexander; Mehta, Divya; Mullins, Niamh; Adams, Mark J.; Breen, Gerome; McIntosh, Andrew M.; Lewis, Cathryn M.; Hougaard, David M.; Nordentoft, Merete; Mors, Ole; Mortensen, Preben B.; Werge, Thomas; Als, Thomas D.; Borglum, Anders D.; Petryshen, Tracey L.; Smoller, Jordan W.; Goldstein, Jill M.
errShare
errSave
researcher View more