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TeraChem: A graphical processing unit-acceleratedelectronic structure package forlarge-scaleab initio molecular dynamics

delete2020-07-26
delete223
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OA
AI
S
Stefan Seritan
C
Christoph Bannwarth
B
B. Scott Fales
E
Edward G. Hohenstein
C
Christine M. Isborn
S
Sara Kokkila-Schumacher
李鑫 cover
李鑫 (Xin Li)
刘芳 (Fang Liu)
N
Nathan Luehr
J
James W. Snyder
C
Chenchen Song
A
A.V. Titov
I
Ivan S. Ufimtsev
L
Lee‐Ping Wang
T
Todd J. Martı́nez *
DOI:10.1002/wcms.1494delete
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Abstract

Abstract

En 中文
TeraChem was born in 2008 with the goal of providing fast on-the-fly electronic structure calculations to facilitate ab initio molecular dynamics studies of large biochemical systems such as photoswitchable proteins and multichromophoric antenna complexes. Originally developed for videogaming applications, graphics processing units (GPUs) offered a low-cost parallel computer architecture that became more accessible for general-purpose GPU computing with the release of CUDA in 2007. The evaluation of the electron repulsion integrals (ERIs) is a major bottleneck in electronic structure codes and provides an attractive target for acceleration on GPUs. Thus, highly efficient routines for evaluation of and contractions between the ERIs and density matrices were implemented in TeraChem. Electronic structure methods were developed and implemented to leverage these integral contraction routines, resulting in the first quantum chemistry package designed from the ground up for GPUs. This GPU acceleration makes TeraChem capable of performing large-scale ground and excited state calculations in the gas and condensed phase. Today, TeraChem's speed forms the basis for a suite of quantum chemistry applications, including optimization and dynamics of proteins, automated and interactive chemical discovery tools, and large-scale nonadiabatic dynamics simulations. This article is categorized under: Electronic Structure Theory > Ab Initio Electronic Structure Methods Software > Quantum Chemistry Structure and Mechanism > Computational Biochemistry and Biophysics
Keywords:
Electronic structure
ab initio molecular dynamics
graphical processing units
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Wiley Interdisciplinary Reviews and Computational Molecular Science
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