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The antiSMASH database version 5

delete2025-11-01
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PRE
AI
K
Kai Blin
S
Simon J. Shaw
M
Marnix H. Medema
T
Tilmann Weber *
DOI:10.1093/nar/gkaf1210delete
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Abstract

Abstract

En 中文
Specialized metabolites produced by microorganisms are frequently used in the development of drugs and crop protection agents. Genome mining is a widely used approach to access this potential, and antiSMASH is often the tool of choice for this task. Here, we present version 5 of the antiSMASH database, with biosynthetic gene cluster predictions provided by antiSMASH 8.1 available in an easy-to-use web interface. Version 5 of the database contains 833 archaeal, 54 800 bacterial, and 421 fungal genomes and is available from https://antismash-db.secondarymetabolites.org/.
Keywords:
TOOLS

Journal

Nucleic Acids Research cover
Nucleic Acids Research
IF:
13.1
Papers:
3.6W
Citations:
29.0W

Organization

T
Technical University of Denmark
Scholars:
2.8K
Papers: 1.1K
Citations: 1
W
Wageningen University & Research
Scholars:
2.9W
Papers: 2.8W
Citations: 55
Cited Papers

Cited Papers

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
err2023-05-04
err674
errOAAI
errBlin, Kai; Shaw, Simon; Augustijn, Hannah E.; Reitz, Zachary L.; Biermann, Friederike; Alanjary, Mohammad; Fetter, Artem; Terlouw, Barbara R.; Metcalf, William W.; Helfrich, Eric J. N.; van Wezel, Gilles P.; Medema, Marnix H.; Weber, Tilmann
errShare
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Computational approaches to natural product discovery
err2015-08-18
err386
errOAAI
errMedema, Marnix H.; Fischbach, Michael A.
errShare
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NCBI RefSeq: reference sequence standards through 25 years of curation and annotation
err2024-11-11
err3
errOAAI
errGoldfarb, Tamara; Kodali, Vamsi K.; Pujar, Shashikant; Brover, Vyacheslav; Robbertse, Barbara; Farrell, Catherine M.; Oh, Dong-Ha; Astashyn, Alexander; Ermolaeva, Olga; Haddad, Diana; Hlavina, Wratko; Hoffman, Jinna; Jackson, John D.; Joardar, Vinita S.; Kristensen, David; Masterson, Patrick; Mcgarvey, Kelly M.; Mcveigh, Richard; Mozes, Eyal; Murphy, Michael R.; Schafer, Susan S.; Souvorov, Alexander; Spurrier, Brett; Strope, Pooja K.; Sun, Hanzhen; Vatsan, Anjana R.; Wallin, Craig; Webb, David; Brister, J. Rodney; Hatcher, Eneida; Kimchi, Avi; Klimke, William; Marchler-Bauer, Aron; Pruitt, Kim D.; Thibaud-Nissen, Francoise; Murphy, Terence D.
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Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem
err2022-12-20
err22
errOAAI
errSanchez-Navarro, Roberto; Nuhamunada, Matin; Mohite, Omkar S.; Wasmund, Kenneth; Albertsen, Mads; Gram, Lone; Nielsen, Per H.; Weber, Tilmann; Singleton, Caitlin M.
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antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers
err2013-05-21
err730
errOAAI
errBlin, Kai; Medema, Marnix H.; Kazempour, Daniyal; Fischbach, Michael A.; Breitling, Rainer; Takano, Eriko; Weber, Tilmann
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antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
err2019-04-29
err2.2K
errOAAI
errBlin, Kai; Shaw, Simon; Steinke, Katharina; Villebro, Rasmus; Ziemert, Nadine; Lee, Sang Yup; Medema, Marnix H.; Weber, Tilmann
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antiSMASH 6.0: improving cluster detection and comparison capabilities
err2021-05-12
err1.7K
errOAAI
errBlin, Kai; Shaw, Simon; Kloosterman, Alexander M.; Charlop-Powers, Zach; van Wezel, Gilles P.; Medema, Marnix H.; Weber, Tilmann
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errSave
The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters
err2018-11-05
err208
errOAAI
errBlin, Kai; Andreu, Victoria Pascal; de los Santos, Emmanuel L. C.; Del Carratore, Francesco; Lee, Sang Yup; Medema, Marnix H.; Weber, Tilmann
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