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The ensembl core software libraries

delete2004-05-03
delete102
delete
OA
AI
A
Arne Stabenau
G
Graham McVicker
C
Craig Melsopp
G
Glenn Proctor
M
Michèle Clamp
E
Ewan Birney
DOI：10.1101/gr.1857204delete
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Abstract

Abstract

En 中文
Systems for managing genomic data must store a Vast quantity of information. Ensembl stores these data in several MySQL databases. The core software libraries provide a practical and effective means for programmers to access these data. By encapsulating the underlying database structure, the libraries present end users with a simple, abstract interface to a complex data model. Programs that use the libraries rather than SQL to access the data are unaffected by most schema changes. The architecture of the core software libraries, the schema, and the factors influencing their design are described. All code and data are freely available.
Keywords:
GENOME BROWSER
DATABASE
BIOLOGY
INFORMATION
SEQUENCE
PROTEINS
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Key information extracted from the uploaded paper, including a brief overview, abstract, background, key highlights, visual analysis, and future outlook.

Journal

Genome Research cover
Genome Research
IF:
5.5
Papers:
5.6K
Citations:
4.3W

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