.png){kind=icon}
Return
The jmzQuantML programming interface and validator for the mzQuantML data standard
.png){kind=icon}
OA
AI
DOI：10.1002/pmic.201300281.png)
.png){kind=icon}
.png){kind=icon}
Share.png){kind=icon}
Save
Abstract
En 中文
The mzQuantML standard from the HUPO Proteomics Standards Initiative has recently been released, capturing quantitative data about peptides and proteins, following analysis of MS data. We present a Java application programming interface (API) for mzQuantML called jmzQuantML. The API provides robust bridges between Java classes and elements in mzQuantML files and allows random access to any part of the file. The API provides read and write capabilities, and is designed to be embedded in other software packages, enabling mzQuantML support to be added to proteomics software tools (). The mzQuantML standard is designed around a multilevel validation system to ensure that files are structurally and semantically correct for different proteomics quantitative techniques. In this article, we also describe a Java software tool () for validating mzQuantML files, which is a formal part of the data standard.
Keywords:
Bioinformatics
Java API
mzQuantML
Proteomics Standards Initiative
XML
AI Summary
Key information extracted from the uploaded paper, including a brief overview, abstract, background, key highlights, visual analysis, and future outlook.
Journal
IF:
3.9
Papers:
7.6K
Citations:
1.1W
Organization
Cited Papers
ShareSaveThe PSI semantic validator: A framework to check MIAPE compliance of proteomics data.png)
PROTEOMICS
PROTEOMICSIF3.9
PREAI
ShareSavejmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification dataPROTEOMICSOAAI
PROTEOMICSIF3.9
OAAIShareSaveShareSaveShareSaveShareSave no more
no more