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Unsupervised learning for local structure detection in colloidal systems

delete2019-10-15
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E
Emanuele Boattini *
M
Marjolein Dijkstra
L
Laura Filion
DOI:10.1063/1.5118867delete
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Abstract

Abstract

En 中文
We introduce a simple, fast, and easy to implement unsupervised learning algorithm for detecting different local environments on a single-particle level in colloidal systems. In this algorithm, we use a vector of standard bond-orientational order parameters to describe the local environment of each particle. We then use a neural-network-based autoencoder combined with Gaussian mixture models in order to autonomously group together similar environments. We test the performance of the method on snapshots of a wide variety of colloidal systems obtained via computer simulations, ranging from simple isotropically interacting systems to binary mixtures, and even anisotropic hard cubes. Additionally, we look at a variety of common self-assembled situations such as fluid-crystal and crystal-crystal coexistences, grain boundaries, and nucleation. In all cases, we are able to identify the relevant local environments to a similar precision as standard, manually tuned, and system-specific, order parameters. In addition to classifying such environments, we also use the trained autoencoder in order to determine the most relevant bond orientational order parameters in the systems analyzed. Published under license by AIP Publishing.
Keywords:
CRYSTAL-NUCLEATION
ORDER
IDENTIFICATION
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Journal

Journal of Chemical Physics cover
Journal of Chemical Physics
IF:
3.1
Papers:
7.2W
Citations:
23.2W

Organization

U
Utrecht University
Scholars:
6.0W
Papers: 5.1W
Citations: 5.8W