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Institute for Systems Biology (Isb)

Scholars1.1K
Papers823
Citations9
Related Papers (821)
Publication Date
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Comparative physiological and genomic characterization of a novel Nitrobacter vulgaris strain from a nitrate-contaminated subsurface
errApplied and Environmental Microbiology
IF3.7
err2026-03-01
err0
PREAI
errFlinkstrom, Zachary; Hunt, Kristopher A.; Abrahamson, Britt; Harvell, Pierce; Li, Xiangpeng; Wilson, James; Cooper, Zachary S.; Valenzuela, Jacob J.; Baliga, Nitin S.; Stahl, David A.; Qin, Wei; Winkler, Mari-Karoliina H.
errShare
errSave
Robust predictors for drug response of patients with acute myeloid leukemia
errPLoS One
IF2.6
err2026-02-23
err0
PREAI
errTercan, Bahar
errShare
errSave
Metabolic modeling reveals determinants of prebiotic and probiotic treatment efficacy across multiple human intervention trials
errPLOS Biology
IF7.2
err2026-02-01
err0
PREAI
errQuinn-Bohmann, Nick; Carr, Alex V.; Gibbons, Sean M.
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errSave
Predicting Microsatellite Instability from Whole Slide Images Using Texture Features
errBIOINFORMATICS AND COMPUTATIONAL BIOLOGY, X-MEETING 2025
IF0
err2026-01-01
err1
PREAI
errSwanson, Nilus; Castro, Mauro A. A.; Robertson, A. Gordon; Shmulevich, Ilya; Tercan, Bahar
errShare
errSave
The PanOryza pangene catalog of Asian cultivated rice
errGenome Research
IF5.5
err2026-01-01
err1
PREAI
errContreras-Moreira, Bruno; Sharma, Eshan; Saraf, Shradha; Naamati, Guy; Gupta, Parul; Elser, Justin; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Wei, Sharon; Olson, Andrew; Tsang, Ian; Lodha, Disha; Zhou, Yong; Yu, Zhichao; Zhao, Wen; Zhang, Jianwei; Amberkar, Sandeep; Sue-Ob, Kawinnat; Sun, Zhi; Martin, Maria; McNally, Kenneth L.; Ware, Doreen; Deutsch, Eric W.; Copetti, Dario; Wing, Rod A.; Jaiswal, Pankaj; Dyer, Sarah; Jones, Andrew R.
errShare
errSave
Genome-wide DNA methylation changes after 24 hours at high altitude
errEnvironmental Epigenetics
IF3.2
err2026-01-01
err0
PREAI
errFrost, Shyleen; Pham, Kathy; Heinrich, Erica C.
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errSave
MICOMWeb: a website for microbial community metabolic modeling of the human gut
errGUT MICROBES
IF11
err2025-12-31
err0
PREAI
errFresno, Cristobal; Oropeza-Valdez, Juan Jose; Alvarado-Luis, Perla Itzel; Pena-Gonzalez, Patricia; Tovar, Armando R.; Torres, Nimbe; Diener, Christian; Gibbons, Sean; Resendis-Antonio, Osbaldo
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The ProteomeXchange consortium in 2026: making proteomics data FAIR
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err1
PREAI
errDeutsch, Eric W.; Bandeira, Nuno; Perez-Riverol, Yasset; Sharma, Vagisha; Carver, Jeremy j; Mendoza, Luis; Kundu, Deepti J.; Bandla, Chakradhar; Kamatchinathan, Selvakumar; Hewapathirana, Suresh; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Connolly, Brian; Maclean, Brendan; Maccoss, Michael J.; Chen, Tao; Zhu, Yunping; Ishihama, Yasushi; Vizcaino, Juan Antonio
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errSave
Multiomic clocks to predict phenotypic age in mice
errJOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES
IF3.8
err2025-11-01
err0
errOAAI
errVera, Daniel L.; Griffin, Patrick T.; Leigh, David; Kras, Jason; Ramos, Enrique; Bishof, Isaac; Butler, Anderson; Chwalek, Karolina; Vogel, David S.; Kane, Alice E.; Sinclair, David A.
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errSave
High-throughput identification and analysis of antigen-specific CD4+T cells
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errZhang, Rongyu; Qi, Jingqi; Mckasson, Michaela; Gutierrez, Vanessa; Brennan, Conor; Choi, Jongchan; Chour, William; Hong, Sunga; Ng, Rachel; Webster, Andrew; Xie, Jingyi; Trimble, Connie; Ribas, Antoni; Heath, James
errShare
errSave
Is the emergence of life and of agency expected?
errPHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF4.7
err2025-10-02
err1
PREAI
errKauffman, Stuart; Roli, Andrea
errShare
errSave
When Maxwell's Demon leaves the room
errBiosystems
IF1.9
err2025-10-01
err1
PREAI
errTello, P. G.; Kauffman, S.
errShare
errSave
Innate Immune Phenotypes During Acute High-Altitude Exposure
errHIGH ALTITUDE MEDICINE & BIOLOGY
IF1.4
err2025-09-01
err0
PREAI
errVargas, Abel; Penuelas, Veronica; Mkrtchyan, Karapet G.; Pham, Kathy; Frost, Shyleen; Moya, Esteban A.; Yu, James J.; Simonson, Tatum S.; Heinrich, Erica C.
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errSave
Candida albicans: A Comprehensive View of the Proteome
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-03-01
err0
PREAI
errGomez-Artiguez, Leticia; de la Camara-fuentes, Samuel; Sun, Zhi; Hernaez, Maria Luisa; Borrajo, Ana; Pitarch, Aida; Molero, Gloria; Monteoliva, Lucia; Moritz, Robert L.; Deutsch, Eric W.; Gil, Concha
errShare
errSave
Fokker-Planck diffusion maps of microglial transcriptomes reveal radial differentiation into substates associated with Alzheimer's pathology
errCOMMUNICATIONS BIOLOGY
IF5.1
err2025-02-22
err0
errOAAI
errBaumgartner, Andrew; Robinson, Max; Ertekin-Taner, Nilufer; Golde, Todd E.; Jaydev, Suman; Huang, Sui; Hadlock, Jennifer; Funk, Cory
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errSave
A large-scale database of T-cell receptor beta sequences and binding associations from natural and synthetic exposure to SARS-CoV-2
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2025-02-17
err1
errOAAI
errNolan, Sean; Vignali, Marissa; Klinger, Mark; Dines, Jennifer N.; Kaplan, Ian M.; Svejnoha, Emily; Craft, Tracy; Boland, Katie; Pesesky, Mitchell W.; Gittelman, Rachel M.; Snyder, Thomas M.; Gooley, Christopher J.; Semprini, Simona; Cerchione, Claudio; Nicolini, Fabio; Mazza, Massimiliano; Delmonte, Ottavia M.; Dobbs, Kerry; Carreno-Tarragona, Gonzalo; Barrio, Santiago; Sambri, Vittorio; Martinelli, Giovanni; Goldman, Jason D.; Heath, James R.; Notarangelo, Luigi D.; Martinez-Lopez, Joaquin; Howie, Bryan; Carlson, Jonathan M.; Robins, Harlan S.
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errSave
Searching for Sulfotyrosines (sY) in a HA(pY)STACK
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2025-02-05
err0
errOAAI
errTzvetkov, Jordan; Eyers, Claire E.; Eyers, Patrick A.; Ramsbottom, Kerry A.; Oswald, Sally O.; Harris, John A.; Sun, Zhi; Deutsch, Eric W.; Jones, Andrew R.
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errSave
Emergence and disruption of cooperativity in a denitrifying microbial community
errISME JOURNAL
IF10
err2025-01-01
err1
errOAAI
errCarr, Alex, V; Otwell, Anne E.; Hunt, Kristopher A.; Chen, Yan; Wilson, James; Faria, Jose P.; Liu, Filipe; Edirisinghe, Janaka N.; Valenzuela, Jacob J.; Turkarslan, Serdar; Lui, Lauren M.; Nielsen, Torben N.; Arkin, Adam P.; Henry, Christopher S.; Petzold, Christopher J.; Stahl, David A.; Baliga, Nitin S.
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Multi-Omic characterization of the effects of Ocrelizumab in patients with relapsing-remitting multiple sclerosis
errJOURNAL OF THE NEUROLOGICAL SCIENCES
IF3.2
err2024-12-01
err1
PREAI
errKornilov, Sergey A.; Price, Nathan D.; Gelinas, Richard; Acosta, Juan; Brunkow, Mary E.; Gervasi-Follmar, Tiffany; Winger, Ryan C.; Aldershoff, Dmitri; Lausted, Christopher; Troisch, Pamela; Smith, Brett; Heath, James R.; Repovic, Pavle; Cohan, Stanley; Magis, Andrew T.
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Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora
errBMC GENOMICS
IF3.7
err2024-11-20
err2
errOAAI
errLocatelli, Nicolas S.; Kitchen, Sheila A.; Stankiewicz, Kathryn H.; Osborne, C. Cornelia; Dellaert, Zoe; Elder, Holland; Kamel, Bishoy; Koch, Hanna R.; Fogarty, Nicole D.; Baums, Iliana B.
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