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Swiss Institute of Bioinformatics

Scholars2.6K
Papers1.6K
Citations9
Related Papers (1564)
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Deep learning aging marker from retinal images unveils sex-specific clinical and genetic signatures
err2026-08-26
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errOAAI
errOlga Trofimova; Leah Böttger; Sacha Bors; Yating Pan; Bart Liefers; Jose D. Vargas-Quiros; Victor A. de Vries; Michael J. Beyeler; David M. Presby; Dennis Bontempi; Janna Hastings; Caroline C. W. Klaver; Sven Bergmann
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Resolving the complex CES1 genomic locus with Cas9-directed targeted long-read sequencing
err2026-08-22
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errOAAI
errE. Lekka; A. Ambrodji; A. Nater; A. Ballah; U. Amstutz; A. Ramette; C. R. Largiadèr
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Bonsai reconstructs tree representations for distortion-free visualization and exploration of high-dimensional data
err2026-08-21
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errOAAI
errDaan H. de Groot; Sarah X. Morillo Leonardo; Mikhail Pachkov; Erik van Nimwegen
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Extensive binding of poorly characterized human transcription factors to genomic dark matter
err2026-08-05
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errOAAI
errRozita Razavi; Ali Fathi; Isaac Yellan; Alexander Brechalov; Kaitlin U. Laverty; Arttu Jolma; Aldo Hernandez-Corchado; Hong Zheng; Ally W. H. Yang; Mihai Albu; Marjan Barazandeh; Chun Hu; Ilya E. Vorontsov; Zain M. Patel; Ivan V. Kulakovskiy; Philipp Bucher; Quaid Morris; Hamed S. Najafabadi; Timothy R. Hughes
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An expanded codebook of human transcription factor DNA-binding specificity
errNature
IF48.5
err2026-08-05
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errOAAI
errArttu Jolma; Kaitlin U. Laverty; Ali Fathi; Ally W. H. Yang; Isaac Yellan; Ilya E. Vorontsov; Antoni J. Gralak; Judith F. Kribelbauer-Swietek; Sachi Inukai; Rozita Razavi; Mihai Albu; Alexander Brechalov; Zain M. Patel; Vladimir Nozdrin; Georgy Meshcheryakov; Andrey Buyan; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Quaid Morris; Matthew T. Weirauch; Oriol Fornes; Vsevolod J. Makeev; Jan Grau; Ivo Grosse; Philipp Bucher; Bart Deplancke; Ivan V. Kulakovskiy; Timothy R. Hughes
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MetaboT: an LLM-based multi-agent framework for interactive analysis of mass spectrometry metabolomics knowledge graphs
err2026-07-24
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errOAAI
errMadina Bekbergenova; Lucas Pradi; Benjamin Navet; Emma Tysinger; Franck Michel; Matthieu Feraud; Yousouf Taghzouti; Yan Zhou Chen; Olivier Kirchhoffer; Florence Mehl; Martin Legrand; Tao Jiang; Marco Pagni; Soha Hassoun; Jean-Luc Wolfender; Wout Bittremieux; Fabien Gandon; Louis-Félix Nothias
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Prognostic RNA-splicing archetypes in breast cancer identified by extended pre-training of histopathology foundation models
err2026-07-07
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errLisa Fournier; Garance Haefliger; Albin Vernhes; Vincent Jung; Lena Loye; Valentine Du Bois; Intidhar Labidi-Galy; Pascal Frossard; Igor Letovanec; Cédric Vincent-Cuaz; Raphaëlle Luisier
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Genome-wide association study of untargeted plasma metabolomic profiles identifies host genetic regulation in people with HIV
err2026-06-17
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errOAAI
errMariam Ait Oumelloul; Adriaan van der Graaf; Simon Tang; Christian W. Thorball; Marco Labarile; Ali Saadat; Valeriia Timonina; Isabella C. Schöpf; Gilles Wandeler; Johannes Nemeth; Matthias Cavassini; Alexandra Calmy; Patrick Schmid; Marcel Stöckle; Luigia Elzi; Nicola Zamboni; Roger D. Kouyos; Philip E. Tarr; Jacques Fellay
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Epigenetic landscapes in human pancreatic islets reveal distinct drivers for adaptation to age and type 2 diabetes
err2026-06-03
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errLucas Maurin; Lorella Marselli; Mathilde Boissel; Vincent Pascat; Mara Suleiman; Emma Henriques; Carmela De Luca; Lijiao Ning; Marie Fourcot; Marta Tesi; Bénédicte Toussaint; Souhila Amanzougarene; Mehdi Derhourhi; Frédérik Oger; Frederic Burdet; Mickael Canouil; Miriam Cnop; Mark Ibberson; Amélie Bonnefond; Piero Marchetti; Philippe Froguel; Amna Khamis
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Generative AI for spatial tumor growth on MRI: a proof-of-principle study in pediatric diffuse midline glioma
err2026-05-18
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errOAAI
errDaria Laslo; Julia Wolleb; Maria Monzon; Raimund Kottke; Selma Sirin; Timothy Müller; Dror Suhami; Franziska Vogt; Aashim Bhatia; Deep B. Gandhi; Anahita Fathi Kazerooni; Ariana M. Familiar; Thien Nguyen; Zhifan Jiang; Abhijeet Parida; Nicolas U. Gerber; Ana Guerreiro Stücklin; Ali Nabavizadeh; Javad Nazarian; Marius George Linguraru; Andreas M. Rauschecker; Sabine Müller; Catherine Jutzeler; Sarah Brüningk
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Exploring Resistance to ETS Targeting Agents in Diffuse Large B-Cell Lymphoma
err2026-05-13
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errOAAI
errSpriano, Filippo; Cascione, Luciano; Tarantelli, Chiara; Sartori, Giulio; Arribas, Alberto J.; Velasova, Adriana; Napoli, Sara; Havranek, Ondrej; Toretsky, Jeffrey A.; Bertoni, Francesco
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Transposable elements are driving rapid adaptation of Enterococcus faecium
errNature
IF48.5
err2026-04-01
err1
PREAI
errGrieshop, Matthew P.; Behr, Aaron A.; Bowden, Sierra; Lin, Jordan D.; Molari, Marco; Reynolds, Gabriella Z. M.; Brooks, Erin F.; Doyle, Boryana; Moore, Ashley A.; Rodriguez-Nava, Guillermo; Salinas, Jorge L.; Banaei, Niaz; Bhatt, Ami S.
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Age-dependent Phylodynamics with Application to Single-cell Lineage Trees
err2026-04-01
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PREAI
errMulberry, Nicola; Pilarski, Julia; Dinger, Jana; Stadler, Tanja
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Manipulation of regulators of morphogenesis is not sufficient to render a Candida albicans colonizer strain pathogenic
errmBio
IF4.7
err2026-04-01
err0
PREAI
errFrois-Martins, Ricardo; Mertens, Sarah; Tran, Van Du T.; Maufrais, Corinne; d'Enfert, Christophe; Sanglard, Dominique; LeibundGut-Landmann, Salome
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From clinics to sewers: leveraging environmental surveillance and whole genome sequencing to inform transmission of ESBL-Escherichia coli in Switzerland
err2026-04-01
err1
PREAI
errConforti, Sheena; Du Plessis, Louis; Bagutti, Claudia; Becker, Jens; Brugger, Silvio D.; Cusini, Alexia; Egli, Adrian; Gaia, Valeria; Greub, Gilbert; Guler, Cornelia; Huisman, Jana S.; Kocher, Claudine; Kouyos, Roger D.; Leuzinger, Karoline; Maffioli, Carola; Neacsu, Mara; Nolte, Oliver; Ramette, Alban; Seiffert, Salome N.; Tschudin-Sutter, Sarah; Zumthor, Jon Paulin; Stadler, Tanja; Julian, Timothy R.
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pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources
err2026-03-01
err0
PREAI
errGadiya, Yojana; Millan Acosta, Javier; Ammar, Ammar; Adriaque Lozano, Alejandro; Wetstede, Delano; Martinat, Dominik; Sima, Ana Claudia; Mei, Hailiang; Willighagen, Egon; Abbassi-Daloii, Tooba
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Early feature extraction drives model performance in high-resolution chromatin accessibility prediction
err2026-03-01
err0
PREAI
errGrover, Aayush; Muser, Till; Kasak, Liine; Zhang, Lin; Krymova, Ekaterina; Boeva, Valentina
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Hospital@Home: improving discharge management and reducing the risk of rehospitalizations in multimorbid Patients - Protocol for a randomized clinical trial
err2026-03-01
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PREAI
errBrennecke, Fabian; Neurauter, Seraina; Werner, Manuela; Hardmeier, Sabrina; Babler, Beatrice; Rutishauser, Jonas; Alfare, Lisa; Reeve, Kelly; Prummer, Michael; Ballmer, Florence; Garzetti, Valentina; Beer, Jurg H.; Brown, Stefanie; Wertli, Maria M.
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Predicting the topography of fitness landscapes from the structure of genotype-phenotype maps
err2026-03-01
err0
PREAI
errSrivastava, Malvika; Louis, Ard A.; Martin, Nora S.
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Open and sustainable AI: challenges, opportunities and the road ahead in the life sciences
err2026-03-01
err0
PREAI
errFarrell, Gavin; Adamidi, Eleni; Andrade Buono, Rafael; Anton, Mihail; Attafi, Omar Abdelghani; Capella Gutierrez, Salvador; Capriotti, Emidio; Castro, Leyla Jael; Cirillo, Davide; Crossman, Lisa; Dessimoz, Christophe; Dimopoulos, Alexandros; Fernandez-Diaz, Raul; Fragkouli, Styliani-Christina; Goble, Carole; Gu, Wei; Hancock, John M.; Khanteymoori, Alireza; Lenaerts, Tom; Liberante, Fabio G.; Maccallum, Peter; Monzon, Alexander Miguel; Palmblad, Magnus; Poveda, Lucy; Radulescu, Ovidiu; Shields, Denis C.; Sufi, Shoaib; Vergoulis, Thanasis; Psomopoulos, Fotis; Tosatto, Silvio C. E.
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