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Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species Hasan, Nur A.; Grim, Christopher J.; Lipp, Erin K.; Rivera, Irma N. G.; Chun, Jongsik; Haley, Bradd J.; Taviani, Elisa; Choi, Seon Young; Hoq, Mozammel; Munk, A. Christine; Brettin, Thomas S.; Bruce, David; Challacombe, Jean F.; Detter, J. Chris; Han, Cliff S.; Eisen, Jonathan A.; Huq, Anwar; Colwell, Rita R. Share Save
Adaptation Genomics of a Small-Colony Variant in a Pseudomonas chlororaphis 30-84 Biofilm Wang, Dongping; Dorosky, Robert J.; Han, Cliff S.; Lo, Chien-chi; Dichosa, Armand E. K.; Chain, Patrick S.; Yu, Jun Myoung; Pierson, Leland S., III; Pierson, Elizabeth A. Share Save
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Using phage display selected antibodies to dissect microbiomes for complete de novo genome sequencing of low abundance microbes Close, Devin W.; Ferrara, Fortunato; Dichosa, Armand E. K.; Kumar, Sandeep; Daughton, Ashlynn R.; Daligault, Hajnalka E.; Reitenga, Krista G.; Velappan, Nileena; Sanchez, Timothy C.; Iyer, Srinivas; Kiss, Csaba; Han, Cliff S.; Bradbury, Andrew R. M. Share Save
Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome Fitzsimons, Michael S.; Novotny, Mark; Lo, Chien-Chi; Dichosa, Armand E. K.; Yee-Greenbaum, Joyclyn L.; Snook, Jeremy P.; Gu, Wei; Chertkov, Olga; Davenport, Karen W.; McMurry, Kim; Reitenga, Krista G.; Daughton, Ashlynn R.; He, Jian; Johnson, Shannon L.; Gleasner, Cheryl D.; Wills, Patti L.; Parson-Quintana, Beverly; Chain, Patrick S.; Detter, John C.; Lasken, Roger S.; Han, Cliff S. Share Save
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing Shih, Patrick M.; Wu, Dongying; Latifi, Amel; Axen, Seth D.; Fewer, David P.; Talla, Emmanuel; Calteau, Alexandra; Cai, Fei; de Marsac, Nicole Tandeau; Rippka, Rosmarie; Herdman, Michael; Sivonen, Kaarina; Coursin, Therese; Laurent, Thierry; Goodwin, Lynne; Nolan, Matt; Davenport, Karen W.; Han, Cliff S.; Rubin, Edward M.; Eisen, Jonathan A.; Woyke, Tanja; Gugger, Muriel; Kerfeld, Cheryl A. Share Save
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Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici Lamour, Kurt H.; Mudge, Joann; Gobena, Daniel; Hurtado-Gonzales, Oscar P.; Schmutz, Jeremy; Kuo, Alan; Miller, Neil A.; Rice, Brandon J.; Raffaele, Sylvain; Cano, Liliana M.; Bharti, Arvind K.; Donahoo, Ryan S.; Finley, Sabra; Huitema, Edgar; Hulvey, Jon; Platt, Darren; Salamov, Asaf; Savidor, Alon; Sharma, Rahul; Stam, Remco; Storey, Dylan; Thines, Marco; Win, Joe; Haas, Brian J.; Dinwiddie, Darrell L.; Jenkins, Jerry; Knight, James R.; Affourtit, Jason P.; Han, Cliff S.; Chertkov, Olga; Lindquist, Erika A.; Detter, Chris; Grigoriev, Igor V.; Kamoun, Sophien; Kingsmore, Stephen F. Share Save
Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses Siddaramappa, Shivakumara; Challacombe, Jean F.; Duncan, Alison J.; Gillaspy, Allison F.; Carson, Matthew; Gipson, Jenny; Orvis, Joshua; Zaitshik, Jeremy; Barnes, Gentry; Bruce, David; Chertkov, Olga; Detter, J. Chris; Han, Cliff S.; Tapia, Roxanne; Thompson, Linda S.; Dyer, David W.; Inzana, Thomas J. Share Save
Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus Tang, Kuo-Hsiang; Barry, Kerrie; Chertkov, Olga; Dalin, Eileen; Han, Cliff S.; Hauser, Loren J.; Honchak, Barbara M.; Karbach, Lauren E.; Land, Miriam L.; Lapidus, Alla; Larimer, Frank W.; Mikhailova, Natalia; Pitluck, Samuel; Pierson, Beverly K.; Blankenship, Robert E. Share Save
Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti Galardini, Marco; Mengoni, Alessio; Brilli, Matteo; Pini, Francesco; Fioravanti, Antonella; Lucas, Susan; Lapidus, Alla; Cheng, Jan-Fang; Goodwin, Lynne; Pitluck, Samuel; Land, Miriam; Hauser, Loren; Woike, Tanja; Mikhailova, Natalia; Ivanova, Natalia; Daligault, Hajnalka; Bruce, David; Detter, Chris; Tapia, Roxanne; Han, Cliff; Teshima, Hazuki; Mocali, Stefano; Bazzicalupo, Marco; Biondi, Emanuele G. Share Save
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma Kubicek, Christian P.; Herrera-Estrella, Alfredo; Seidl-Seiboth, Verena; Martinez, Diego A.; Druzhinina, Irina S.; Thon, Michael; Zeilinger, Susanne; Casas-Flores, Sergio; Horwitz, Benjamin A.; Mukherjee, Prasun K.; Mukherjee, Mala; Kredics, Laszlo; Alcaraz, Luis D.; Aerts, Andrea; Antal, Zsuzsanna; Atanasova, Lea; Cervantes-Badillo, Mayte G.; Challacombe, Jean; Chertkov, Olga; McCluskey, Kevin; Coulpier, Fanny; Deshpande, Nandan; von Doehren, Hans; Ebbole, Daniel J.; Esquivel-Naranjo, Edgardo U.; Fekete, Erzsebet; Flipphi, Michel; Glaser, Fabian; Gomez-Rodriguez, Elida Y.; Gruber, Sabine; Han, Cliff; Henrissat, Bernard; Hermosa, Rosa; Hernandez-Onate, Miguel; Karaffa, Levente; Kosti, Idit; Le Crom, Stephane; Lindquist, Erika; Lucas, Susan; Luebeck, Mette; Luebeck, Peter S.; Margeot, Antoine; Metz, Benjamin; Misra, Monica; Nevalainen, Helena; Omann, Markus; Packer, Nicolle; Perrone, Giancarlo; Uresti-Rivera, Edith E.; Salamov, Asaf; Schmoll, Monika; Seiboth, Bernhard; Shapiro, Harris; Sukno, Serenella; Tamayo-Ramos, Juan Antonio; Tisch, Doris; Wiest, Aric; Wilkinson, Heather H.; Zhang, Michael; Coutinho, Pedro M.; Kenerley, Charles M.; Monte, Enrique; Baker, Scott E.; Grigoriev, Igor V. Share Save
Epitope-Specific CD8+ T Lymphocytes Cross-Recognize Mutant Simian Immunodeficiency Virus (SIV) Sequences but Fail To Contain Very Early Evolution and Eventual Fixation of Epitope Escape Mutations during SIV Infection Cale, Evan M.; Hraber, Peter; Giorgi, Elena E.; Fischer, Will; Bhattacharya, Tanmoy; Leitner, Thomas; Yeh, Wendy W.; Gleasner, Cheryl; Green, Lance D.; Han, Cliff S.; Korber, Bette; Letvin, Norman L. Share Save
Comparative genomics of clinical and environmental Vibrio mimicus Hasan, Nur A.; Grim, Christopher J.; Haley, Bradd J.; Chun, Jongsik; Alam, Munirul; Taviani, Elisa; Hoq, Mozammel; Munk, A. Christine; Saunders, Elizabeth; Brettin, Thomas S.; Bruce, David C.; Challacombe, Jean F.; Detter, J. Chris; Han, Cliff S.; Xie, Gary; Nair, G. Balakrish; Huq, Anwar; Colwell, Rita R. Share Save
The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production Sieber, Jessica R.; Sims, David R.; Han, Cliff; Kim, Edwin; Lykidis, Athanasios; Lapidus, Alla L.; McDonnald, Erin; Rohlin, Lars; Culley, David E.; Gunsalus, Robert; McInerney, Michael J. Share Save
Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae Haley, Bradd J.; Grim, Christopher J.; Hasan, Nur A.; Choi, Seon-Young; Chun, Jongsik; Brettin, Thomas S.; Bruce, David C.; Challacombe, Jean F.; Detter, J. Chris; Han, Cliff S.; Huq, Anwar; Colwell, Rita R. Share Save
The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1 Junier, Pilar; Junier, Thomas; Podell, Sheila; Sims, David R.; Detter, John C.; Lykidis, Athanasios; Han, Cliff S.; Wigginton, Nicholas S.; Gaasterland, Terry; Bernier-Latmani, Rizlan Share Save
The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir Haley, Bradd J.; Grim, Christopher J.; Hasan, Nur A.; Taviani, Elisa; Chun, Jongsik; Brettin, Thomas S.; Bruce, David C.; Challacombe, Jean F.; Detter, J. Chris; Han, Cliff S.; Huq, Anwar; Nair, G. Balakrish; Colwell, Rita R. Share Save
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