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Remote visualization of large-scale genomic alignments for collaborative clinical research and diagnosis of rare diseases Corvo, Alberto; Matalonga, Leslie; Spalding, Dylan; Senf, Alexander; Laurie, Steven; Pico-Amador, Daniel; Fernandez-Callejo, Marcos; Paramonov, Ida; Romero, Anna Foix; Garcia-Rios, Emilio; Ciges, Jorge Izquierdo; Mohan, Anand; Thomas, Coline; Valencia, Andres Felipe Silva; Halmagyi, Csaba; Freeberg, Mallory Ann; Topf, Ana; Horvath, Rita; Saunders, Gary; Gut, Ivo; Keane, Thomas; Piscia, Davide; Beltran, Sergi Share Save
Tackling the translational challenges of multi-omics research in the realm of European personalised medicine: A workshop report Oldoni, Emanuela; Saunders, Gary; Bietrix, Florence; Garcia Bermejo, Maria Laura; Niehues, Anna; 't Hoen, Peter A. C.; Nordlund, Jessica; Hajduch, Marian; Scherer, Andreas; Kivinen, Katja; Pitkanen, Esa; Makela, Tomi Pekka; Gut, Ivo; Scollen, Serena; Kozera, Lukasz; Esteller, Manel; Shi, Leming; Ussi, Anton; Andreu, Antonio L.; van Gool, Alain J. Share Save
Beacon v2 and Beacon networks: A lingua franca for federated data discovery in biomedical genomics, and beyond Rambla, Jordi; Baudis, Michael; Ariosa, Roberto; Beck, Tim; Fromont, Lauren A.; Navarro, Arcadi; Paloots, Rahel; Rueda, Manuel; Saunders, Gary; Singh, Babita; Spalding, John D.; Tornroos, Juha; Vasallo, Claudia; Veal, Colin D.; Brookes, Anthony J. Share Save
The Data Use Ontology to streamline responsible access to human biomedical datasets Lawson, Jonathan; Cabili, Moran N.; Kerry, Giselle; Boughtwood, Tiffany; Thorogood, Adrian; Alper, Pinar; Bowers, Sarion R.; Boyles, Rebecca R.; Brookes, Anthony J.; Brush, Matthew; Burdett, Tony; Clissold, Hayley; Donnelly, Stacey; Dyke, Stephanie O. M.; Freeberg, Mallory A.; Haendel, Melissa A.; Hata, Chihir; Holub, Petr; Jeanson, Francis; Jene, Aina; Kawashima, Minae; Kawashima, Shuichi; Konopko, Melissa; Kyomugisha, Irene; Li, Haoyuan; Linden, Mikael; Rodriguez, Laura Lyman; Morita, Mizuki; Mulder, Nicola; Muller, Jean; Nagaie, Satoshi; Nasir, Jamal; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura D.; Pandya, Ravi N.; Parkinson, Helen; Philippakis, Anthony A.; Prasser, Fabian; Rambla, Jordi; Reinold, Kathy; Rushton, Gregory A.; Saltzman, Andrea; Saunders, Gary; Sofia, Heidi J.; Spalding, John D.; Swertz, Morris A.; Tulchinsky, Ilia; Enckevort, Esther J. van; Varma, Susheel; Voisin, Craig; Yamamoto, Natsuko; Yamasaki, Chisato; Zass, Lyndon; Auvil, Jaime M. Guidry; Nyronen, Tommi H.; Courtot, Melanie Share Save
GA4GH: International policies and standards for data sharing across genomic research and healthcare Rehm, Heidi L.; Page, Angela J. H.; Smith, Lindsay; Adams, Jeremy B.; Alterovitz, Gil; Babb, Lawrence J.; Barkley, Maxmillian P.; Baudis, Michael; Beauvais, Michael J. S.; Beck, Tim; Beckmann, Jacques S.; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K.; Boughtwood, Tiffany F.; Bourque, Guillaume; Bowers, Sarion R.; Brookes, Anthony J.; Brudno, Michael; Brush, Matthew H.; Bujold, David; Burdett, Tony; Buske, Orion J.; Cabili, Moran N.; Cameron, Daniel L.; Carroll, Robert J.; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P.; Chen, Shu Hui; Cherry, J. Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L.; Cook-Deegan, Robert M.; Courtot, Melanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M.; Denisko, Danielle; Doerr, Megan J.; Dolman, Lena I.; Dove, Edward S.; Dursi, L. Jonathan; Dyke, Stephanie O. M.; Eddy, James A.; Eilbeck, Karen; Ellrott, Kyle P.; Fairley, Susan; Fakhro, Khalid A.; Firth, Helen V.; Fitzsimons, Michael S.; Fiume, Marc; Flicek, Paul; Fore, Ian M.; Freeberg, Mallory A.; Freimuth, Robert R.; Fromont, Lauren A.; Fuerth, Jonathan; Gaff, Clara L.; Gan, Weiniu; Ghanaim, Elena M.; Glazer, David; Green, Robert C.; Griffith, Malachi; Griffith, Obi L.; Grossman, Robert L.; Groza, Tudor; Auvil, Jaime M. Guidry; Guigo, Roderic; Gupta, Dipayan; Haendel, Melissa A.; Hamosh, Ada; Hansen, David P.; Hart, Reece K.; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M.; Ho, Calvin W. L.; Hobb, Ashley E.; Hoffman, Michael M.; Hofmann, Oliver M.; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E.; Husami, Ammar; Jacobsen, Julius O.; Jamuar, Saumya S.; Janes, Elizabeth L.; Jeanson, Francis; Jene, Aina; Johns, Amber L.; Joly, Yann; Jones, Steven J. M.; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M.; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M.; Konopko, Melissa A.; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F.; Linden, Mikael; Liu, Xianglin; Liyanage, Isuru Udara; Lopez, Javier; Lucassen, Anneke M.; Lukowski, Michael; Mann, Alice L.; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J.; Molnar-Gabor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C.; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H.; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyronen, Tommi H.; O'Connor, Brian D.; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A. D.; Palumbo, Emilio; Parkinson, Helen E.; Philippakis, Anthony A.; Pizarro, Angel D.; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A.; Robinson, Peter N.; Rodarmer, Kurt W.; Rodriguez, Laura Lyman; Rubin, Alan F.; Rueda, Manuel; Rushton, Gregory A.; Ryan, Rosalyn S.; Saunders, Gary I.; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C.; Skantharajah, Neerjah; Smith, Albert V.; Sofia, Heidi J.; Spalding, Dylan; Spurdle, Amanda B.; Stark, Zornitza; Stein, Lincoln D.; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A.; Thomson, Alastair A.; Thorogood, Adrian; Tickle, Timothy L.; Tokunaga, Katsushi; Tomroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F.; Viner, Coby; Voisin, Craig; Wagner, Alex H.; Wallace, Susan E.; Walsh, Brian P.; Williams, Marc S.; Winkler, Eva C.; Wold, Barbara J.; Wood, Grant M.; Woolley, J. Patrick; Yamasaki, Chisato; Yates, Andrew D.; Yung, Christina K.; Zass, Lyndon J.; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan Share Save
The European Variation Archive: a FAIR resource of genomic variation for all species Cezard, Timothe; Cunningham, Fiona; Hunt, Sarah E.; Koylass, Baron; Kumar, Nitin; Saunders, Gary; Shen, April; Silva, Andres F.; Tsukanov, Kirill; Venkataraman, Sundararaman; Flicek, Paul; Parkinson, Helen; Keane, Thomas M. Share Save
Leveraging European infrastructures to access 1 million human genomes by 2022 (vol 20, pg 693, 2019) Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Beroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Soren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M.; Korbel, Jan O.; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th.; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyronen, Tommi; Page, Angela; Persson, Bengt; Palotie, Aarno; Parkinson, Helen; Rambla, Jordi; Salgado, David; Steinfelder, Erik; Swertz, Morris A.; Valencia, Alfonso; Varma, Susheel; Blomberg, Niklas; Scollen, Serena Share Save
Leveraging European infrastructures to access 1 million human genomes by 2022 Saunders, Gary; Baudis, Michael; Becker, Regina; Beltran, Sergi; Beroud, Christophe; Birney, Ewan; Brooksbank, Cath; Brunak, Soren; Van den Bulcke, Marc; Drysdale, Rachel; Capella-Gutierrez, Salvador; Flicek, Paul; Florindi, Francesco; Goodhand, Peter; Gut, Ivo; Heringa, Jaap; Holub, Petr; Hooyberghs, Jef; Juty, Nick; Keane, Thomas M.; Korbel, Jan O.; Lappalainen, Ilkka; Leskosek, Brane; Matthijs, Gert; Mayrhofer, Michaela Th.; Metspalu, Andres; Navarro, Arcadi; Newhouse, Steven; Nyronen, Tommi; Page, Angela; Persson, Bengt; Palotie, Aarno; Parkinson, Helen; Rambla, Jordi; Salgado, David; Steinfelder, Erik; Swertz, Morris A.; Valencia, Alfonso; Varma, Susheel; Blomberg, Niklas; Scollen, Serena Share Save
Federated discovery and sharing of genomic data using Beacons (vol 37, pg 220, 2019) Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O. M.; Brookes, Anthony J.; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Tornroos, Juha; Linden, Mikael; Spalding, J. Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena Share Save
Federated discovery and sharing of genomic data using Beacons Fiume, Marc; Cupak, Miroslav; Keenan, Stephen; Rambla, Jordi; de la Torre, Sabela; Dyke, Stephanie O. M.; Brookes, Anthony J.; Carey, Knox; Lloyd, David; Goodhand, Peter; Haeussler, Maximilian; Baudis, Michael; Stockinger, Heinz; Dolman, Lena; Lappalainen, Ilkka; Tornroos, Juha; Linden, Mikael; Spalding, J. Dylan; Ur-Rehman, Saif; Page, Angela; Flicek, Paul; Sherry, Stephen; Haussler, David; Varma, Susheel; Saunders, Gary; Scollen, Serena Share Save
Open Targets: a platform for therapeutic target identification and validation Koscielny, Gautier; An, Peter; Carvalho-Silva, Denise; Cham, Jennifer A.; Fumis, Luca; Gasparyan, Rippa; Hasan, Samiul; Karamanis, Nikiforos; Maguire, Michael; Papa, Eliseo; Pierleoni, Andrea; Pignatelli, Miguel; Platt, Theo; Rowland, Francis; Wankar, Priyanka; Bento, A. Patricia; Burdett, Tony; Fabregat, Antonio; Forbes, Simon; Gaulton, Anna; Gonzalez, Cristina Yenyxe; Hermjakob, Henning; Hersey, Anne; Jupe, Steven; Kafkas, Senay; Keays, Maria; Leroy, Catherine; Lopez, Francisco-Javier; Magarinos, Maria Paula; Malone, James; McEntyre, Johanna; Fuentes, Alfonso Munoz-Pomer; O'Donovan, Claire; Papatheodorou, Irene; Parkinson, Helen; Palka, Barbara; Paschall, Justin; Petryszak, Robert; Pratanwanich, Naruemon; Sarntivijal, Sirarat; Saunders, Gary; Sidiropoulos, Konstantinos; Smith, Thomas; Sondka, Zbyslaw; Stegle, Oliver; Tang, Amy; Turner, Edward; Vaughan, Brendan; Vrousgou, Olga; Watkins, Xavier; Martin, Maria-Jesus; Sanseau, Philippe; Vamathevan, Jessica; Birney, Ewan; Barrett, Jeffrey; Dunham, Ian Share Save
The European Genome-phenome Archive of human data consented for biomedical research Lappalainen, Ilkka; Almeida-King, Jeff; Kumanduri, Vasudev; Senf, Alexander; Spalding, John Dylan; Ur-Rehman, Saif; Saunders, Gary; Kandasamy, Jag; Caccamo, Mario; Leinonen, Rasko; Vaughan, Brendan; Laurent, Thomas; Rowland, Francis; Marin-Garcia, Pablo; Barker, Jonathan; Jokinen, Petteri; Torres, Angel Carreno; de Argila, Jordi Rambla; Llobet, Oscar Martinez; Medina, Ignacio; Puy, Marc Sitges; Alberich, Mario; de la Torre, Sabela; Navarro, Arcadi; Paschall, Justin; Flicek, Paul Share Save
Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age Deelen, Joris; Beekman, Marian; Uh, Hae-Won; Broer, Linda; Ayers, Kristin L.; Tan, Qihua; Kamatani, Yoichiro; Bennet, Anna M.; Tamm, Riin; Trompet, Stella; Guobjartsson, Daniel F.; Flachsbart, Friederike; Rose, Giuseppina; Viktorin, Alexander; Fischer, Krista; Nygaard, Marianne; Cordell, Heather J.; Crocco, Paolina; Van den Akker, Erik B.; Bohringer, Stefan; Helmer, Quinta; Nelson, Christopher P.; Saunders, Gary I.; Alver, Maris; Andersen-Ranberg, Karen; Breen, Marie E.; van der Breggen, Ruud; Caliebe, Amke; Capri, Miriam; Cevenini, Elisa; Collerton, Joanna C.; Dato, Serena; Davies, Karen; Ford, Ian; Gampe, Jutta; Garagnani, Paolo; de Geus, Eco J. C.; Harrow, Jennifer; van Heemst, Diana; Heijmans, Bastiaan T.; Heinsen, Femke-Anouska; Hottenga, Jouke-Jan; Hofman, Albert; Jeune, Bernard; Jonsson, Palmi V.; Lathrop, Mark; Lechner, Doris; Martin-Ruiz, Carmen; Mcnerlan, Susan E.; Mihailov, Evelin; Montesanto, Alberto; Mooijaart, Simon P.; Murphy, Anne; Nohr, Ellen A.; Paternoster, Lavinia; Postmus, Iris; Rivadeneira, Fernando; Ross, Owen A.; Salvioli, Stefano; Sattar, Naveed; Schreiber, Stefan; Stefansson, Hreinn; Stott, David J.; Tiemeier, Henning; Uitterlinden, Andre G.; Westendorp, Rudi G. J.; Willemsen, Gonneke; Samani, Nilesh J.; Galan, Pilar; Sorensen, Thorkild I. A.; Boomsma, Dorret I.; Jukema, J. Wouter; Rea, Irene Maeve; Passarino, Giuseppe; de Craen, Anton J. M.; Christensen, Kaare; Nebel, Almut; Stefansson, Kari; Metspalu, Andres; Magnusson, Patrik; Blanche, Helene; Christiansen, Lene; Kirkwood, Thomas B. L.; van Duijn, Cornelia M.; Franceschi, Claudio; Houwing-Duistermaat, Jeanine J.; Slagboom, P. Eline Share Save
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery Laing, Roz; Kikuchi, Taisei; Martinelli, Axel; Tsai, Isheng J.; Beech, Robin N.; Redman, Elizabeth; Holroyd, Nancy; Bartley, David J.; Beasley, Helen; Britton, Collette; Curran, David; Devaney, Eileen; Gilabert, Aude; Hunt, Martin; Jackson, Frank; Johnston, Stephanie L.; Kryukov, Ivan; Li, Keyu; Morrison, Alison A.; Reid, Adam J.; Sargison, Neil; Saunders, Gary I.; Wasmuth, James D.; Wolstenholme, Adrian; Berriman, Matthew; Gilleard, John S.; Cotton, James A. Share Save
Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes Saunders, Gary Ian; Wasmuth, James David; Beech, Robin; Laing, Roz; Hunt, Martin; Naghra, Hardeep; Cotton, James A.; Berriman, Matt; Britton, Collette; Gilleard, John Stuart Share Save
GENCODE: The reference human genome annotation for The ENCODE Project Harrow, Jennifer; Frankish, Adam; Gonzalez, Jose M.; Tapanari, Electra; Diekhans, Mark; Kokocinski, Felix; Aken, Bronwen L.; Barrell, Daniel; Zadissa, Amonida; Searle, Stephen; Barnes, If; Bignell, Alexandra; Boychenko, Veronika; Hunt, Toby; Kay, Mike; Mukherjee, Gaurab; Rajan, Jeena; Despacio-Reyes, Gloria; Saunders, Gary; Steward, Charles; Harte, Rachel; Lin, Michael; Howald, Cedric; Tanzer, Andrea; Derrien, Thomas; Chrast, Jacqueline; Walters, Nathalie; Balasubramanian, Suganthi; Pei, Baikang; Tress, Michael; Manuel Rodriguez, Jose; Ezkurdia, Iakes; van Baren, Jeltje; Brent, Michael; Haussler, David; Kellis, Manolis; Valencia, Alfonso; Reymond, Alexandre; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. Share Save
Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and resurrected pseudogenes in the mouse genome Brosch, Markus; Saunders, Gary I.; Frankish, Adam; Collins, Mark O.; Yu, Lu; Wright, James; Verstraten, Ruth; Adams, David J.; Harrow, Jennifer; Choudhary, Jyoti S.; Hubbard, Tim Share Save
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