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Nicholas M. Luscombe

shanghai jiao tong university

73H-index
249Paper Count
2.8WCitation Count
Published Papers 94
Publication Date
Integrative profiling of condensation-prone RNAs during early development
err2025-11-19
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errOAAI
errTajda Klobučar; Jona Novljan; Ira A. Iosub; Boštjan Kokot; Iztok Urbančič; D. Marc Jones; Anob M. Chakrabarti; Nicholas M. Luscombe; Jernej Ule; Miha Modic
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Genomic insights and the conservation potential of captive breeding: The case of Chinese alligator
err2025-04-04
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PREAI
errPan, Tao; Miao, Jiashun; Sun, Ke; Nie, Haitao; Luscombe, Nicholas M.; Li, Wengang; Zhang, Song; Yang, Liuyang; Wang, Huan; Zhou, Yongkang; Tu, Genjun; Shu, Yilin; Zhang, Baowei; Wu, Xiaobing
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Transcriptomes of a fast-developing chordate uncover drastic differences in transcription factors and localized maternal RNA composition compared with those of ascidians
err2025-03-01
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PREAI
errWang, Kai; Suyama, Ritsuko; Mizutani, Nanako; Matsuo, Masaki; Peng, Yu; Seki, Masahide; Suzuki, Yutaka; Luscombe, Nicholas M.; Dantec, Christelle; Lemaire, Patrick; Toyoda, Atsushi; Nishida, Hiroki; Onuma, Takeshi A.
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Tracing Homopolymers in Oikopleura dioica's Mitogenome
err2024-08-20
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errOAAI
errDierckxsens, Nicolas; Watanabe, Kosei; Tan, Yongkai; Masunaga, Aki; Mansfield, Michael J.; Miao, Jiashun; Luscombe, Nicholas M.; Plessy, Charles
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Poised PABP-RNA hubs implement signal-dependent mRNA decay in development
err2024-07-25
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errModic, Miha; Kuret, Klara; Steinhauser, Sebastian; Faraway, Rupert; van Genderen, Emiel; de los Mozos, Igor Ruiz; Novljan, Jona; Vicic, Ziga; Lee, Flora C. Y.; ten Berge, Derk; Luscombe, Nicholas M.; Ule, Jernej
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Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species
err2024-04-15
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errPlessy, Charles; Mansfield, Michael J.; Bliznina, Aleksandra; Masunaga, Aki; West, Charlotte; Tan, Yongkai; Liu, Andrew W.; Grasic, Jan; Pisula, Maria Sara del Rio; Sanchez-Serna, Gaspar; Fabrega-Torrus, Marc; Ferrandez-Roldan, Alfonso; Roncalli, Vittoria; Navratilova, Pavla; Thompson, Eric M.; Onuma, Takeshi; Nishida, Hiroki; Canestro, Cristian; Luscombe, Nicholas M.
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scRNA-sequencing in chick suggests a probabilistic model for cell fate allocation at the neural plate border
err2023-08-02
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errOAAI
errThiery, Alexandre P.; Buzzi, Ailin Leticia; Hamrud, Eva; Cheshire, Chris; Luscombe, Nicholas M.; Briscoe, James; Streit, Andrea
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A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3′ UTR structure to RNA metabolism
err2023-04-04
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errChakrabarti, Anob M.; Iosub, Ira A.; Lee, Flora C. Y.; Ule, Jernej; Luscombe, Nicholas M.
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CREB binds to multiple loci on human chromosome 22
err2023-03-27
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errOAAI
errEuskirchen, G; Royce, TE; Bertone, P; Martone, R; Rinn, JL; Nelson, FK; Sayward, F; Luscombe, NM; Miller, P; Gerstein, M; Weissman, S; Snyder, M
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clipplotr-a comparative visualization and analysis tool for CLIP data
errRNA
IF5
err2023-03-09
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errOAAI
errChakrabarti, Anob M. M.; Capitanchik, Charlotte; Ule, Jernej; Luscombe, Nicholas M. M.
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A gene regulatory network for neural induction
err2023-03-03
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errTrevers, Katherine E.; Lu, Hui-Chun; Yang, Youwen; Thiery, Alexandre P.; Strobl, Anna C.; Anderson, Claire; Palinkasova, Bozena; de Oliveira, Nidia M. M.; de Almeida, Irene M.; Khan, Mohsin A. F.; Moncaut, Natalia; Luscombe, Nicholas M.; Dale, Leslie; Streit, Andrea; Stern, Claudio D.
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RNA polymerase II-associated proteins reveal pathways affected in VCP-related amyotrophic lateral sclerosis
errBRAIN
IF11.7
err2023-02-15
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errOAAI
errRafiee, Mahmoud-Reza; Rohban, Sara; Davey, Karen; Ule, Jernej; Luscombe, Nicholas M.
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N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast
err2022-11-24
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errOAAI
errVarier, Radhika A.; Sideri, Theodora; Capitanchik, Charlotte; Manova, Zornitsa; Calvani, Enrica; Rossi, Alice; Edupuganti, Raghu R.; Ensinck, Imke; Chan, Vincent W. C.; Patel, Harshil; Kirkpatrick, Joanna; Faull, Peter; Snijders, Ambrosius P.; Vermeulen, Michiel; Ralser, Markus; Ule, Jernej; Luscombe, Nicholas M.; van Werven, Folkert J.
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Meta-analysis of human and mouse ALS astrocytes reveals multi-omic signatures of inflammatory reactive states
err2021-12-28
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errOAAI
errZiff, Oliver J.; Clarke, Benjamin E.; Taha, Doaa M.; Crerar, Hamish; Luscombe, Nicholas M.; Patani, Rickie
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RNA modifications detection by comparative Nanopore direct RNA sequencing
err2021-12-10
err198
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errLeger, Adrien; Amaral, Paulo P.; Pandolfini, Luca; Capitanchik, Charlotte; Capraro, Federica; Miano, Valentina; Migliori, Valentina; Toolan-Kerr, Patrick; Sideri, Theodora; Enright, Anton J.; Tzelepis, Konstantinos; van Werven, Folkert J.; Luscombe, Nicholas M.; Barbieri, Isaia; Ule, Jernej; Fitzgerald, Tomas; Birney, Ewan; Leonardi, Tommaso; Kouzarides, Tony
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Chromatin-contact atlas reveals disorder-mediated protein interactions and moonlighting chromatin-associated RBPs
err2021-12-06
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errRafiee, Mahmoud-Reza; Zagalak, Julian A.; Sidorov, Sviatoslav; Steinhauser, Sebastian; Davey, Karen; Ule, Jernej; Luscombe, Nicholas M.
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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions (vol 11, 1018, 2020)
err2021-05-19
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errBonetti, Alessandro; Agostini, Federico; Suzuki, Ana Maria; Hashimoto, Kosuke; Pascarella, Giovanni; Gimenez, Juliette; Roos, Leonie; Nash, Alex J.; Ghilotti, Marco; Cameron, Christopher J. F.; Valentine, Matthew; Medvedeva, Yulia A.; Noguchi, Shuhei; Agirre, Eneritz; Kashi, Kaori; Samudyata; Luginbuehl, Joachim; Cazzoli, Riccardo; Agrawal, Saumya; Luscombe, Nicholas M.; Blanchette, Mathieu; Kasukawa, Takeya; de Hoon, Michiel; Arner, Erik; Lenhard, Boris; Plessy, Charles; Castelo-Branco, Goncalo; Orlando, Valerio; Carninci, Piero
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A systems view of spliceosomal assembly and branchpoints with iCLIP (vol 26, pg 930, 2019)
err2021-05-05
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errOAAI
errBriese, Michael; Haberman, Nejc; Sibley, Christopher R.; Faraway, Rupert; Elser, Andrea S.; Chakrabarti, Anob M.; Wang, Zhen; Konig, Julian; Perera, David; Wickramasinghe, Vihandha O.; Venkitaraman, Ashok R.; Luscombe, Nicholas M.; Saieva, Luciano; Pellizzoni, Livio; Smith, Christopher W. J.; Curk, Tomaz; Ule, Jernej
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Intergenic RNA mainly derives from nascent transcripts of known genes
err2021-05-05
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errAgostini, Federico; Zagalak, Julian; Attig, Jan; Ule, Jernej; Luscombe, Nicholas M.
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Clinically Relevant Vulnerabilities of Deep Machine Learning Systems for Skin Cancer Diagnosis
err2021-04-01
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errDu-Harpur, Xinyi; Arthurs, Callum; Ganier, Clarisse; Woolf, Rick; Laftah, Zainab; Lakhan, Manpreet; Salam, Amr; Wan, Bo; Watt, Fiona M.; Luscombe, Nicholas M.; Lynch, Magnus D.
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