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Diane E. Dickel

Lawrence Berkeley National Laboratory

39H-index
117Paper Count
8.5KCitation Count
Published Papers 40
Publication Date
An expanded registry of candidate cis-regulatory elements
errNature
IF48.5
err2026-01-07
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errOAAI
errJill E. Moore; Henry E. Pratt; Kaili Fan; Nishigandha Phalke; Jonathan Fisher; Shaimae I. Elhajjajy; Gregory Andrews; Mingshi Gao; Nicole Shedd; Yu Fu; Matthew C. Lacadie; Jair Meza; Mansi Khandpekar; Mohit Ganna; Eva Choudhury; Ross Swofford; Huong Phan; Christian C. Ramirez; Maxwell Campbell; Mary Likhite; Nina P. Farrell; Annika K. Weimer; Anusri Pampari; Vivekanandan Ramalingam; Fairlie Reese; Beatrice Borsari; Xuezhu Yu; Eve Wattenberg; Marina Ruiz-Romero; Milad Razavi-Mohseni; Jinrui Xu; Timur Galeev; Andres Colubri; Michael A. Beer; Roderic Guigó; Mark B. Gerstein; Jesse M. Engreitz; Mats Ljungman; Timothy E. Reddy; Michael P. Snyder; Charles B. Epstein; Elizabeth Gaskell; Bradley E. Bernstein; Diane E. Dickel; Axel Visel; Len A. Pennacchio; Ali Mortazavi; Anshul Kundaje; Zhiping Weng
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Uncovering hidden enhancers through unbiased in vivo testing
err2025-08-08
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errOAAI
errBrandon J. Mannion; Stella Tran; Ingrid Plajzer-Frick; Catherine S. Novak; Veena Afzal; Jennifer A. Akiyama; Ismael Sospedra-Arrufat; Sarah Barton; Erik Beckman; Tyler H. Garvin; Patrick Godfrey; Janeth Godoy; Riana D. Hunter; Momoe Kato; Michael Kosicki; Anne N. Kronshage; Elizabeth A. Lee; Eman M. Meky; Quan T. Pham; Kianna von Maydell; Yiwen Zhu; Javier Lopez-Rios; Diane E. Dickel; Marco Osterwalder; Axel Visel; Len A. Pennacchio
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Range extender mediates long-distance enhancer activity
errNature
IF48.5
err2025-07-02
err0
errOAAI
errGrace Bower; Ethan W. Hollingsworth; Sandra H. Jacinto; Joshua A. Alcantara; Benjamin Clock; Kaitlyn Cao; Mandy Liu; Adam Dziulko; Ana Alcaina-Caro; Qianlan Xu; Dorota Skowronska-Krawczyk; Javier Lopez-Rios; Diane E. Dickel; Anaïs F. Bardet; Len A. Pennacchio; Axel Visel; Evgeny Z. Kvon
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Next-generation corrector therapy for Fabry disease
err2025-02-01
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PREAI
errJones, Eric M.; Kim, Stacie; Lao, Jessica; Dickel, Diane; Tarver, Sarah; Jiang, Bryan; Zheng, Tao; Waghray, Deepali; Luis, Nathaniel; Ky, Dominic; Albert, Matthew; Resnick, Carmen; Howard, Conor; Kovary, Kyle; Gormick, Alexa; Sinz, Christopher J.
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Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues
err2024-12-16
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errOAAI
errYu, Miao; Zemke, Nathan R.; Chen, Ziyin; Juric, Ivan; Hu, Rong; Raviram, Ramya; Abnousi, Armen; Fang, Rongxin; Zhang, Yanxiao; Gorkin, David U.; Li, Yang E.; Zhao, Yuan; Lee, Lindsay; Mishra, Shreya; Schmitt, Anthony D.; Qiu, Yunjiang; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Hu, Ming; Ren, Bing
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VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers
err2024-10-29
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errOAAI
errKosicki, Michael; Baltoumas, Fotis A.; Kelman, Guy; Boverhof, Joshua; Ong, Yeongshnn; Cook, Laura E.; Dickel, Diane E.; Pavlopoulos, Georgios A.; Pennacchio, Len A.; Visel, Axel
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A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival
err2024-10-10
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errOAAI
errAbassah-Oppong, Samuel; Zoia, Matteo; Mannion, Brandon J.; Rouco, Raquel; Tissieres, Virginie; Spurrell, Cailyn H.; Roland, Virginia; Darbellay, Fabrice; Itum, Anja; Gamart, Julie; Festa-Daroux, Tabitha A.; Sullivan, Carly S.; Kosicki, Michael; Rodriguez-Carballo, Eddie; Fukuda-Yuzawa, Yoko; Hunter, Riana D.; Novak, Catherine S.; Plajzer-Frick, Ingrid; Tran, Stella; Akiyama, Jennifer A.; Dickel, Diane E.; Lopez-Rios, Javier; Barozzi, Iros; Andrey, Guillaume; Visel, Axel; Pennacchio, Len A.; Cobb, John; Osterwalder, Marco
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Nr2f1 enhancers have distinct functions in controlling Nr2f1 expression during cortical development
err2024-09-23
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errOAAI
errLiu, Zhidong; Ypsilanti, Athena R.; Papadimitriou, Eirene Markenscoff-; Dickel, Diane E.; Sanders, Stephan J.; Dong, Shan; Pennacchio, Len A.; Visel, Axel; Rubenstein, John L.
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Increased enhancer-promoter interactions during developmental enhancer activation in mammals
err2024-03-20
err9
errOAAI
errChen, Zhuoxin; Snetkova, Valentina; Bower, Grace; Jacinto, Sandra; Clock, Benjamin; Dizehchi, Atrin; Barozzi, Iros; Mannion, Brandon J.; Alcaina-Caro, Ana; Lopez-Rios, Javier; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Kvon, Evgeny Z.
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Dynamic enhancer landscapes in human craniofacial development
err2024-03-06
err2
errOAAI
errRajderkar, Sudha Sunil; Paraiso, Kitt; Amaral, Maria Luisa; Kosicki, Michael; Cook, Laura E.; Darbellay, Fabrice; Spurrell, Cailyn H.; Osterwalder, Marco; Zhu, Yiwen; Wu, Han; Afzal, Sarah Yasmeen; Blow, Matthew J.; Kelman, Guy; Barozzi, Iros; Fukuda-Yuzawa, Yoko; Akiyama, Jennifer A.; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Hunter, Riana D.; von Maydell, Kianna; Wang, Allen; Lin, Lin; Preissl, Sebastian; Lisgo, Steven; Ren, Bing; Dickel, Diane E.; Pennacchio, Len A.; Visel, Axel
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Topologically associating domain boundaries are required for normal genome function
err2023-04-20
err31
errOAAI
errRajderkar, Sudha; Barozzi, Iros; Zhu, Yiwen; Hu, Rong; Zhang, Yanxiao; Li, Bin; Caro, Ana Alcaina; Fukuda-Yuzawa, Yoko; Kelman, Guy; Akeza, Adyam; Blow, Matthew J.; Pham, Quan; Harrington, Anne N.; Godoy, Janeth; Meky, Eman M.; von Maydell, Kianna; Hunter, Riana D.; Akiyama, Jennifer A.; Novak, Catherine S.; Plajzer-Frick, Ingrid; Afzal, Veena; Tran, Stella; Lopez-Rios, Javier; Talkowski, Michael E.; Lloyd, K. C. Kent; Ren, Bing; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.
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Genome-wide fetalization of enhancer architecture in heart disease
err2022-09-01
err8
errOAAI
errSpurrell, Cailyn H.; Barozzi, Iros; Kosicki, Michael; Mannion, Brandon J.; Blow, Matthew J.; Fukuda-Yuzawa, Yoko; Slaven, Neil; Afzal, Sarah Y.; Akiyama, Jennifer A.; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Lee, Elizabeth A.; Garvin, Tyler H.; Pham, Quan T.; Kronshage, Anne N.; Lisgo, Steven; Bristow, James; Cappola, Thomas P.; Morley, Michael P.; Margulies, Kenneth B.; Pennacchio, Len A.; Dickel, Diane E.; Visel, Axel
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Differential Etv2 threshold requirement for endothelial and erythropoietic development
err2022-05-01
err10
errOAAI
errSinha, Tanvi; van Bueren, Kelly Lammerts; Dickel, Diane E.; Zlatanova, Ivana; Thomas, Reuben; Lizama, Carlos O.; Xu, Shan-Mei; Zovein, Ann C.; Ikegami, Kohta; Moskowitz, Ivan P.; Pollard, Katherine S.; Pennacchio, Len A.; Black, Brian L.
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Transcriptional network orchestrating regional patterning of cortical progenitors
err2021-12-17
err22
errOAAI
errYpsilanti, Athena R.; Pattabiraman, Kartik; Catta-Preta, Rinaldo; Golonzhka, Olga; Lindtner, Susan; Tang, Ke; Jones, Ian R.; Abnousi, Armen; Juric, Ivan; Hu, Ming; Shen, Yin; Dickel, Diane E.; Visel, Axel; Pennachio, Len A.; Hawrylycz, Michael; Thompson, Carol L.; Zeng, Hongkui; Barozzi, Iros; Nord, Alex S.; Rubenstein, John L.
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Perfect and imperfect views of ultraconserved sequences
err2021-11-11
err19
errOAAI
errSnetkova, Valentina; Pennacchio, Len A.; Visel, Axel; Dickel, Diane E.
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Plant single-cell solutions for energy and the environment
err2021-08-12
err30
errOAAI
errCole, Benjamin; Bergmann, Dominique; Blaby-Haas, Crysten E.; Blaby, Ian K.; Bouchard, Kristofer E.; Brady, Siobhan M.; Ciobanu, Doina; Coleman-Derr, Devin; Leiboff, Samuel; Mortimer, Jenny C.; Nobori, Tatsuya; Rhee, Seung Y.; Schmutz, Jeremy; Simmons, Blake A.; Singh, Anup K.; Sinha, Neelima; Vogel, John P.; O'Malley, Ronan C.; Visel, Axel; Dickel, Diane E.
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Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism
err2021-07-13
err13
errOAAI
errPadhi, Evin M.; Hayeck, Tristan J.; Cheng, Zhang; Chatterjee, Sumantra; Mannion, Brandon J.; Byrska-Bishop, Marta; Willems, Marjolaine; Pinson, Lucile; Redon, Sylvia; Benech, Caroline; Uguen, Kevin; Audebert-Bellanger, Severine; Le Marechal, Cedric; Ferec, Claude; Efthymiou, Stephanie; Rahman, Fatima; Maqbool, Shazia; Maroofian, Reza; Houlden, Henry; Musunuri, Rajeeva; Narzisi, Giuseppe; Abhyankar, Avinash; Hunter, Riana D.; Akiyama, Jennifer; Fries, Lauren E.; Ng, Jeffrey K.; Mehinovic, Elvisa; Stong, Nick; Allen, Andrew S.; Dickel, Diane E.; Bernier, Raphael A.; Gorkin, David U.; Pennacchio, Len A.; Zody, Michael C.; Turner, Tychele N.
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Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice
err2021-04-26
err15
errOAAI
errHaigh, Jessica L.; Adhikari, Anna; Copping, Nycole A.; Stradleigh, Tyler; Wade, A. Ayanna; Catta-Preta, Rinaldo; Su-Feher, Linda; Zdilar, Iva; Morse, Sarah; Fenton, Timothy A.; Nguyen, Anh; Quintero, Diana; Agezew, Samrawit; Sramek, Michael; Kreun, Ellie J.; Carter, Jasmine; Gompers, Andrea; Lambert, Jason T.; Canales, Cesar P.; Pennacchio, Len A.; Visel, Axel; Dickel, Diane E.; Silverman, Jill L.; Nord, Alex S.
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Ultraconserved enhancer function does not require perfect sequence conservation
err2021-03-29
err39
errOAAI
errSnetkova, Valentina; Ypsilanti, Athena R.; Akiyama, Jennifer A.; Mannion, Brandon J.; Plajzer-Frick, Ingrid; Novak, Catherine S.; Harrington, Anne N.; Pham, Quan T.; Kato, Momoe; Zhu, Yiwen; Godoy, Janeth; Meky, Eman; Hunter, Riana D.; Shi, Marie; Kvon, Evgeny Z.; Afzal, Veena; Tran, Stella; Rubenstein, John L. R.; Visel, Axel; Pennacchio, Len A.; Dickel, Diane E.
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Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder
err2020-11-01
err95
errOAAI
errLong, Hannah K.; Osterwalder, Marco; Welsh, Ian C.; Hansen, Karissa; Davies, James O. J.; Liu, Yiran E.; Koska, Mervenaz; Adams, Alexander T.; Aho, Robert; Arora, Neha; Ikeda, Kazuya; Williams, Ruth M.; Sauka-Spengler, Tatjana; Porteus, Matthew H.; Mohun, Tim; Dickel, Diane E.; Swigut, Tomek; Hughes, Jim R.; Higgs, Douglas R.; Visel, Axel; Selleri, Licia; Wysocka, Joanna
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