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J

Jun Ding

mcgill university

51H-index
299Paper Count
1.2WCitation Count
Published Papers 107
Publication Date
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Spatial omics in the AI era: Technologies, algorithmic ecosystems, biological applications, and large model perspectives
erriMeta
IF33.2
err2026-07-06
err0
errOAAI
errHaoxiu Wang; Xinwang Yang; Siheng Wang; Zhe Yang; Xiuhui Yang; Yutong Yang; Zirong Li; Yuqi Ren; Qianqian Zhang; Bowen Zhao; Jingming Xiao; Yidong Wang; Junhao Dong; Zhenhao Kou; Jie Li; Liqun Yang; Erhu Zhao; Gregory Fonseca; Ruibang Luo; Mingyu Yang; Hongjuan Cui; Gengjie Jia; Dan Wang; Haoyang Li; Jun Ding; Zhiyuan Yuan; Haojing Shao
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Dissecting and steering cell dynamics using spatially-informed RNA velocity with veloAgent
errMolecular Systems Biology
IF7.7
err2026-05-06
err0
errOAAI
errVishvak Raghavan; Brent Yoon; Gregory J Fonseca; Yue Li; Jun Ding
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errSave
DENetwork unveils non-differentially expressed genes with functional relevance across conditions through information flow perturbation
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-11
err0
errOAAI
errZhao, Bowen; Su, Ting-Yi; Wang, Jingtao; Islam, Quazi S.; Song, Kailu; Huang, Steven K.; Allez, Matthieu; Fonseca, Gregory J.; Baglole, Carolyn J.; Ding, Jun
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SIDISH integrates single-cell and bulk transcriptomics to identify high-risk cells and guide precision therapeutics through in silico perturbation
errNature Communications
IF15.7
err2025-12-10
err0
errOAAI
errYasmin Jolasun; Kailu Song; Yumin Zheng; Jingtao Wang; Gregory J. Fonseca; David H. Eidelman; Jun Ding
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errSave
scGALA advances graph link prediction-based cell alignment for comprehensive data integration and harmonization
errNature Communications
IF15.7
err2025-11-26
err0
errOAAI
errGuo Jiang; Kailu Song; Gregory J. Fonseca; Darcy E. Wagner; Iain C. Clark; Hui Wang; Jun Ding
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SerpinB9 sustains CIITA to orchestrate MHC-II expression and Th1 differentiation in β-glucan-induced macrophages
errImmunologic Research
IF3.1
err2025-10-29
err0
PREAI
errXin Huang; Jun Ding; Yongzhe Hao; Jie Pan; Meng Yuan; Fang Shao; Yewen Xie; Zhichao Zhu; Chunjian Qi
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errSave
Computational tracking of cell origins using CellSexID from single-cell transcriptomes
errCell Reports Methods
IF4.5
err2025-09-17
err0
errOAAI
errHuilin Tai; Qian Li; Jingtao Wang; Jiahui Tan; Bowen Zhao; Ryann Lang; Basil J. Petrof; Jun Ding
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errSave
Inhibition of epithelial cell YAP-TEAD/LOX signaling attenuates pulmonary fibrosis in preclinical models
errNature Communications
IF15.7
err2025-08-02
err0
errOAAI
errDarcy Elizabeth Wagner; Hani N. Alsafadi; Nilay Mitash; Aurelien Justet; Qianjiang Hu; Ricardo Pineda; Claudia Staab-Weijnitz; Martina Korfei; Nika Gvazava; Kristin Wannemo; Ugochi Onwuka; Molly Mozurak; Adriana Estrada-Bernal; Juan Cala-Garcia; Katrin Mutze; Rita Costa; Deniz Bölükbas; John Stegmayr; Wioletta Skronska-Wasek; Stephan Klee; Chiharu Ota; Hoeke A. Baarsma; Jingtao Wang; John Sembrat; Anne Hilgendorff; Jun Ding; Andreas Günther; Rachel Chambers; Ivan Rosas; Stijn de Langhe; Naftali Kaminski; Mareike Lehmann; Oliver Eickelberg; Melanie Königshoff
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Biological responses during high-dose protein nutrition in the critically ill: a randomized controlled trial
errThe American Journal of Clinical Nutrition
IF0
err2025-06-26
err0
errOAAI
errArnold S Kristof; Mengyin Hong; Nadia Boufaied; Nihad Tousson-Abouelazm; Surya Dandamudi; Kwang-bo Joung; Roupen Hatzakorzian; Michelle Port; Giuseppina Campisi; Ciriaco A. Piccirillo; Gregory J Fonseca; Jun Ding; Daren K Heyland; David P Labbé; Linda Wykes; Thomas Schricker
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The specific hallmarks, emerging roles, key mechanisms, and clinical applications of intra-tumoral microbiota in human cancers
errGenes & Diseases
IF9.4
err2025-06-22
err0
errOAAI
errTingting Zhao; Na Sun; Jun Ding; Zaihui Peng; Fei Han; Xiaowei Qi
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A deep generative model for deciphering cellular dynamics and in silico drug discovery in complex diseases
errNature Biomedical Engineering
IF26.6
err2025-06-20
err0
errOAAI
errYumin Zheng; Jonas C. Schupp; Taylor Adams; Geremy Clair; Aurelien Justet; Farida Ahangari; Xiting Yan; Paul Hansen; Marianne Carlon; Emanuela Cortesi; Marie Vermant; Robin Vos; Laurens J. De Sadeleer; Ivan O. Rosas; Ricardo Pineda; John Sembrat; Melanie Königshoff; John E. McDonough; Bart M. Vanaudenaerde; Wim A. Wuyts; Naftali Kaminski; Jun Ding
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errSave
scCobra allows contrastive cell embedding learning with domain adaptation for single cell data integration and harmonization
errCOMMUNICATIONS BIOLOGY
IF5.1
err2025-02-13
err0
errOAAI
errZhao, Bowen; Song, Kailu; Wei, Dong-Qing; Xiong, Yi; Ding, Jun
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errSave
β-Glucan induced plasma B cells differentiation to enhance antitumor immune responses by Dectin-1
errBMC IMMUNOLOGY
IF2.7
err2025-01-10
err0
errOAAI
errBai, Yu; Ding, Jun; He, Liuyang; Zhu, Zhichao; Pan, Jie; Qi, Chunjian
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errSave
How do different categories of nature-related landscape images shape emotional experience?
errINTERNATIONAL JOURNAL OF PSYCHOLOGY
IF1.6
err2024-12-23
err0
PREAI
errGao, Cheng; Liu, Chang; Jiang, Luyao; Ding, Jun
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errSave
Transplantation of astrocyte-derived mitochondria into injured astrocytes has a protective effect following stretch injury
errMitochondrion
IF4.5
err2024-09-01
err1
errOAAI
errGong, Qiu-yuan; Wang, Wei; Cai, Lin; Jing, Yao; Yang, Dian-xu; Yuan, Fang; Tian, Heng-li; Ding, Jun; Chen, Hao; Xu, Zhi-ming
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errSave
scHiCyclePred: a deep learning framework for predicting cell cycle phases from single-cell Hi-C data using multi-scale interaction information
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-07-31
err1
errOAAI
errWu, Yingfu; Shi, Zhenqi; Zhou, Xiangfei; Zhang, Pengyu; Yang, Xiuhui; Ding, Jun; Wu, Hao
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errSave
scCross: a deep generative model for unifying single-cell multi-omics with seamless integration, cross-modal generation, and in silico exploration
errGENOME BIOLOGY
IF9.4
err2024-07-29
err2
errOAAI
errYang, Xiuhui; Mann, Koren K.; Wu, Hao; Ding, Jun
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scSemiProfiler: Advancing large-scale single-cell studies through semi-profiling with deep generative models and active learning
errNATURE COMMUNICATIONS
IF15.7
err2024-07-16
err1
errOAAI
errWang, Jingtao; Fonseca, Gregory J.; Ding, Jun
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Pathogenesis-Guided Rational Engineering of Nanotherapies for the Targeted Treatment of Abdominal Aortic Aneurysm by Inhibiting Neutrophilic Inflammation
errACS NANO
IF16
err2024-02-19
err9
PREAI
errHu, Kaiyao; Zhong, Ling; Lin, Wenjie; Zhao, Guanli; Pu, Wendan; Feng, Zhiqiang; Zhou, Min; Ding, Jun; Zhang, Jianxiang
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errSave
BCG immunization induces CX3CR1hi effector memory T cells to provide cross-protection via IFN-γ-mediated trained immunity (Jan, 10.1038/s41590-023-01739-z, 2024)
errNATURE IMMUNOLOGY
IF27.6
err2024-02-01
err0
errOAAI
errTran, Kim A.; Pernet, Erwan; Sadeghi, Mina; Downey, Jeffrey; Chronopoulos, Julia; Lapshina, Elizabeth; Tsai, Oscar; Kaufmann, Eva; Ding, Jun; Divangahi, Maziar
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Research Directions

No research directions
Co-authors
Cooperation Journals
刘欢 cover
刘欢 (Huan Liu)
H-index: 174 · Papers: 3.8K
J
Jeffrey A. Whitsett
H-index: 136 · Papers: 759
D
Daren K. Heyland
H-index: 124 · Papers: 782
刘
刘颖 (Ying Liu)
H-index: 118 · Papers: 2.5K
D
Don D. Sin
H-index: 114 · Papers: 1.0K
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